Variant report

Variant	rs12409826
Chromosome Location	chr1:71560350-71560351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71557305..71559385-chr1:71560136..71562584,2	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10493482	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11577923	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11578414	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11800532	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11801478	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11808123	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12402425	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1418448	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17090804	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090955	0.83[AMR][1000 genomes]
rs2744901	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2744903	0.85[EUR][1000 genomes]
rs2744909	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2817867	1.00[CEU][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57667850	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59019236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6699719	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72942304	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7528792	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7545836	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7554527	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9425051	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle
3	chr1:71559600-71560400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr1:71560000-71561200	Enhancers	Fetal Brain Male	brain

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