Variant report

Variant	rs10493482
Chromosome Location	chr1:71633795-71633796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10493484	0.81[AFR][1000 genomes]
rs11577923	0.83[AMR][1000 genomes]
rs11578414	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11800532	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11801478	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11808123	0.81[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12402425	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12409826	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1418448	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090804	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17090955	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs17091031	0.81[AFR][1000 genomes]
rs2744901	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744903	0.80[EUR][1000 genomes]
rs2744909	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2796200	0.87[AMR][1000 genomes]
rs2817867	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57667850	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59019236	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6699719	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72942304	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7528792	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7545836	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7554527	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9425051	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71625400-71637800	Weak transcription	Pancreas	Pancrea
2	chr1:71632800-71634800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:71633600-71633800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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