Variant report
| Variant | rs189568 |
|---|---|
| Chromosome Location | chr4:142067553-142067554 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10028355 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1027815 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10519586 | 1.00[EUR][1000 genomes] |
| rs1507178 | 0.97[EUR][1000 genomes] |
| rs187139 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2033612 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs241867 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs354939 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs354941 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4123363 | 0.98[EUR][1000 genomes] |
| rs4956515 | 0.98[EUR][1000 genomes] |
| rs4956516 | 0.98[EUR][1000 genomes] |
| rs4956517 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs4956518 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs57487954 | 1.00[ASN][1000 genomes] |
| rs62324904 | 0.98[EUR][1000 genomes] |
| rs62324905 | 0.98[EUR][1000 genomes] |
| rs6835953 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6853785 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72724492 | 0.98[EUR][1000 genomes] |
| rs7669929 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880167 | chr4:141616979-142092124 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv880170 | chr4:142046828-142137165 | Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2757959 | chr4:142065661-142367951 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | esv2759287 | chr4:142065661-142367951 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:142066800-142068400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr4:142067200-142067600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
