Variant report

Variant	rs1901100
Chromosome Location	chr3:150069239-150069240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150058583..150074355-chr3:150124068..150134356,51	MCF-7	breast:
2	chr3:150059766..150072041-chr3:150122033..150133129,50	MCF-7	breast:
3	chr3:150068040..150070042-chr3:150085937..150088892,3	MCF-7	breast:
4	chr3:150060739..150062342-chr3:150068219..150069892,2	K562	blood:
5	chr3:150068495..150070637-chr3:150070841..150072414,2	K562	blood:
6	chr3:150066022..150069420-chr3:150088814..150091274,3	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12495943	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9283603	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824615	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9835222	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837240	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9841170	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9846610	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9854097	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150061800-150071000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150061800-150071000	Enhancers	HMEC	breast
3	chr3:150064400-150069400	Enhancers	HSMMtube	muscle
4	chr3:150065200-150069600	Enhancers	HUVEC	blood vessel
5	chr3:150065200-150072600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:150065400-150071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:150065400-150072600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:150065600-150071000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:150065800-150072600	Weak transcription	Left Ventricle	heart
10	chr3:150067000-150069800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:150067000-150071000	Enhancers	NHEK	skin
12	chr3:150067000-150072000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:150067200-150070800	Enhancers	Fetal Heart	heart
14	chr3:150068000-150070800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:150068000-150072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:150068200-150072400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:150068200-150077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:150068600-150075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:150069000-150069400	Enhancers	Psoas Muscle	Psoas
20	chr3:150069000-150070000	Enhancers	HSMM	muscle
21	chr3:150069000-150070200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr3:150069200-150069400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:150069200-150069400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:150069200-150069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:150069200-150069400	Enhancers	NH-A	brain
26	chr3:150069200-150069400	Enhancers	NHDF-Ad	bronchial
27	chr3:150069200-150069600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:150069200-150070600	Enhancers	A549	lung
29	chr3:150069200-150075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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