Variant report

Variant	rs9824615
Chromosome Location	chr3:150058124-150058125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12495943	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1901100	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9283603	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9835222	0.83[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9837240	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9841170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9846610	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9854097	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150043400-150059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:150053000-150066600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:150053400-150062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150053400-150062000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:150053800-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:150053800-150062000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:150054800-150061800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:150055000-150061800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:150055000-150061800	Weak transcription	NHEK	skin
10	chr3:150055200-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:150057800-150058200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:150058000-150058200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:150058000-150058200	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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