Variant report

Variant	rs9835222
Chromosome Location	chr3:150081247-150081248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150076029..150078455-chr3:150079687..150082193,2	K562	blood:
2	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
3	chr3:150081232..150084545-chr3:150085072..150089813,5	K562	blood:
4	chr3:150078900..150083157-chr3:150124558..150126454,5	K562	blood:
5	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
6	chr3:150081124..150084449-chr3:150124687..150129111,4	K562	blood:
7	chr3:150081232..150084840-chr3:150085072..150088254,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12485291	1.00[YRI][hapmap]
rs12495943	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1901100	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9283603	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9824615	0.83[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9837240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9841170	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9854097	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
2	chr3:150076400-150083000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:150080000-150081400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:150080000-150081400	Enhancers	HMEC	breast
5	chr3:150080000-150081400	Enhancers	NHEK	skin
6	chr3:150080200-150081600	Enhancers	Liver	Liver
7	chr3:150080400-150082400	Enhancers	HepG2	liver
8	chr3:150080800-150082400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:150080800-150083000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:150080800-150085200	Weak transcription	Hela-S3	cervix
11	chr3:150081000-150083000	Weak transcription	Esophagus	oesophagus
12	chr3:150081000-150083000	Weak transcription	Fetal Intestine Small	intestine
13	chr3:150081000-150083000	Weak transcription	A549	lung
14	chr3:150081200-150082600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:150081200-150083000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:150081200-150088200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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