Variant report

Variant	rs9841170
Chromosome Location	chr3:150061656-150061657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150058583..150074355-chr3:150124068..150134356,51	MCF-7	breast:
2	chr3:150061653..150065321-chr3:150319922..150322637,3	MCF-7	breast:
3	chr3:150059766..150072041-chr3:150122033..150133129,50	MCF-7	breast:
4	chr3:150060739..150062342-chr3:150068219..150069892,2	K562	blood:
5	chr3:150028795..150040018-chr3:150059749..150069074,18	MCF-7	breast:
6	chr3:150060725..150065011-chr3:150124332..150129241,6	K562	blood:

Variant related genes	Relation type
ENSG00000198843	Chromatin interaction
ENSG00000196428	Chromatin interaction
ENSG00000120742	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12495943	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1901100	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9283603	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9824615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835222	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9837240	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9846610	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9854097	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150053000-150066600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:150053400-150062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150053400-150062000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:150053800-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:150053800-150062000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:150054800-150061800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150055000-150061800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:150055000-150061800	Weak transcription	NHEK	skin
9	chr3:150055200-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:150058200-150062800	Weak transcription	Gastric	stomach
11	chr3:150058200-150067600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:150058400-150066000	Weak transcription	Aorta	Aorta
13	chr3:150058400-150067400	Weak transcription	Right Atrium	heart
14	chr3:150058600-150064600	Weak transcription	NHLF	lung
15	chr3:150059000-150062400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:150059400-150063400	Enhancers	NHDF-Ad	bronchial
17	chr3:150059600-150062600	Enhancers	Fetal Muscle Leg	muscle
18	chr3:150059800-150064800	Weak transcription	Left Ventricle	heart
19	chr3:150060000-150063000	Weak transcription	Fetal Heart	heart
20	chr3:150060000-150063000	Weak transcription	HSMM	muscle
21	chr3:150060000-150064000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:150060000-150064800	Weak transcription	Adipose Nuclei	Adipose
23	chr3:150060200-150062200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:150060400-150063000	Enhancers	A549	lung
25	chr3:150060400-150064200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:150060800-150062000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:150060800-150062800	Enhancers	Hela-S3	cervix
28	chr3:150060800-150064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:150060800-150065200	Weak transcription	Right Ventricle	heart
30	chr3:150060800-150067400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:150060800-150067400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:150061400-150061800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:150061400-150062400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:150061600-150062800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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