Variant report

Variant	rs9837240
Chromosome Location	chr3:150078631-150078632
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12495943	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1901100	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9283603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824615	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9835222	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9841170	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9854097	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150071000-150079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:150071000-150080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:150071000-150080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:150071000-150080000	Weak transcription	HMEC	breast
5	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
6	chr3:150076200-150078800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:150076400-150083000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:150077400-150080400	Weak transcription	A549	lung
9	chr3:150077600-150080000	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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