Variant report

Variant	rs1919722
Chromosome Location	chr12:47796170-47796171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1008150	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10492010	1.00[AFR][1000 genomes]
rs11168107	0.85[ASN][1000 genomes]
rs11168108	0.85[ASN][1000 genomes]
rs11183926	1.00[AFR][1000 genomes]
rs11183937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183938	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183968	1.00[JPT][hapmap]
rs11183969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12227067	1.00[AFR][1000 genomes]
rs12227694	0.85[ASN][1000 genomes]
rs12228708	1.00[AFR][1000 genomes]
rs12230739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1881744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1881745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55647411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56152134	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56296871	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7132005	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7133014	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7298217	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306873	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7309557	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73103608	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73103610	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73105352	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73107445	0.85[ASN][1000 genomes]
rs7313977	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7955175	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47791600-47800200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47791600-47800800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:47791800-47801000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:47792000-47796400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:47792000-47801200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:47792200-47801400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:47795600-47800800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:47796000-47796200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:47796000-47796400	Weak transcription	Primary B cells from cord blood	blood
10	chr12:47796000-47797400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:47796000-47801200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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