Variant report

Variant	rs7955175
Chromosome Location	chr12:47799361-47799362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1008150	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11183937	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11183938	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11183939	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11183943	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1881744	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1881745	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1919722	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55647411	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56152134	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56296871	0.87[AMR][1000 genomes]
rs7132005	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7133014	0.82[ASN][1000 genomes]
rs7298217	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7306873	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7309557	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73103608	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73103610	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73105352	0.82[ASN][1000 genomes]
rs7313977	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47791600-47800200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47791600-47800800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:47791800-47801000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:47792000-47801200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:47792200-47801400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:47795600-47800800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:47796000-47801200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:47797200-47800000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:47797200-47800800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr12:47797200-47804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:47797400-47800800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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