Variant report

Variant	rs7298217
Chromosome Location	chr12:47809049-47809050
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008150	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183943	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183960	0.86[ASN][1000 genomes]
rs11183961	0.86[ASN][1000 genomes]
rs11183965	0.86[ASN][1000 genomes]
rs11183966	0.86[ASN][1000 genomes]
rs11183967	0.86[ASN][1000 genomes]
rs11183968	1.00[JPT][hapmap]
rs11183969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12230739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1881744	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881745	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919722	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2158091	0.86[ASN][1000 genomes]
rs55647411	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296871	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7132005	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133014	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306873	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103608	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103610	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73105352	1.00[ASN][1000 genomes]
rs7313977	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955175	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7298217	OR10AD1	cis	parietal	SCAN
rs7298217	RHEBL1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47802200-47820000	Weak transcription	Aorta	Aorta
2	chr12:47806200-47809200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr12:47806600-47809200	Weak transcription	A549	lung
4	chr12:47808000-47818800	Weak transcription	Hela-S3	cervix
5	chr12:47808200-47809200	Enhancers	Fetal Brain Female	brain
6	chr12:47808200-47812800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:47808200-47813000	Weak transcription	Osteobl	bone
8	chr12:47808600-47809200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr12:47808600-47809400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:47808600-47813000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:47808600-47816000	Weak transcription	Colon Smooth Muscle	Colon
12	chr12:47808800-47809800	Weak transcription	Fetal Brain Male	brain
13	chr12:47809000-47809200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr12:47809000-47810000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:47809000-47810400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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