Variant report

Variant	rs7309557
Chromosome Location	chr12:47808873-47808874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM113B-4	chr12:47808791-47809015	ENSG00000257906
2	lnc-FAM113B-4	chr12:47808867-47809015	XLOC_009728
3	lnc-FAM113B-4	chr12:47808467-47809015	XLOC_009728

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008150	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183937	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183938	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183939	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183943	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183960	0.86[ASN][1000 genomes]
rs11183961	0.86[ASN][1000 genomes]
rs11183965	0.86[ASN][1000 genomes]
rs11183966	0.86[ASN][1000 genomes]
rs11183967	0.86[ASN][1000 genomes]
rs11183968	1.00[JPT][hapmap]
rs11183969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12230739	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1881744	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881745	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919722	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2158091	0.86[ASN][1000 genomes]
rs55647411	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296871	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7132005	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133014	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306873	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103608	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103610	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73105352	1.00[ASN][1000 genomes]
rs7313977	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955175	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47802200-47809000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr12:47802200-47820000	Weak transcription	Aorta	Aorta
3	chr12:47806200-47809200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr12:47806600-47809200	Weak transcription	A549	lung
5	chr12:47807600-47809000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:47807800-47809000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:47808000-47818800	Weak transcription	Hela-S3	cervix
8	chr12:47808200-47809000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr12:47808200-47809200	Enhancers	Fetal Brain Female	brain
10	chr12:47808200-47812800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:47808200-47813000	Weak transcription	Osteobl	bone
12	chr12:47808400-47809000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr12:47808400-47809000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:47808400-47809000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:47808400-47809000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr12:47808600-47809000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:47808600-47809200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:47808600-47809400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:47808600-47813000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:47808600-47816000	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:47808800-47809000	Enhancers	Brain Anterior Caudate	brain
22	chr12:47808800-47809000	Enhancers	GM12878-XiMat	blood
23	chr12:47808800-47809800	Weak transcription	Fetal Brain Male	brain

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