Variant report

Variant	rs73105352
Chromosome Location	chr12:47817452-47817453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1008150	1.00[ASN][1000 genomes]
rs10492010	0.86[AFR][1000 genomes]
rs11168107	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11168108	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11183926	0.86[AFR][1000 genomes]
rs11183937	1.00[ASN][1000 genomes]
rs11183938	1.00[ASN][1000 genomes]
rs11183939	1.00[ASN][1000 genomes]
rs11183943	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11183960	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183961	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183965	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183966	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183967	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12227067	0.86[AFR][1000 genomes]
rs12227694	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12228708	0.86[AFR][1000 genomes]
rs12230739	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1881744	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1881745	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1919722	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2158091	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55647411	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56152134	1.00[ASN][1000 genomes]
rs56296871	0.86[AFR][1000 genomes]
rs7132005	1.00[ASN][1000 genomes]
rs7133014	1.00[ASN][1000 genomes]
rs7298217	1.00[ASN][1000 genomes]
rs7306873	1.00[ASN][1000 genomes]
rs7309557	1.00[ASN][1000 genomes]
rs73103608	1.00[ASN][1000 genomes]
rs73103610	1.00[ASN][1000 genomes]
rs73107445	0.84[EUR][1000 genomes]
rs7313977	1.00[ASN][1000 genomes]
rs7955175	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47802200-47820000	Weak transcription	Aorta	Aorta
2	chr12:47808000-47818800	Weak transcription	Hela-S3	cervix
3	chr12:47815200-47818600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:47815800-47817600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:47816200-47820000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:47816600-47817800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr12:47816800-47818200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:47817200-47817600	Enhancers	Small Intestine	intestine
9	chr12:47817400-47819400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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