Variant report

Variant	rs1922257
Chromosome Location	chr12:124354130-124354131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124353486..124356453-chr12:124360232..124362800,2	MCF-7	breast:
2	chr12:124353111..124356110-chr12:124447736..124450126,2	K562	blood:
3	chr12:124332831..124334511-chr12:124351979..124354225,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10773040	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10773042	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10773043	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10846561	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10846563	1.00[ASN][1000 genomes]
rs10846565	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10846566	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10846567	0.82[CEU][hapmap]
rs10846568	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11057374	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11057375	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.98[ASN][1000 genomes]
rs11057378	0.94[ASN][1000 genomes]
rs11057379	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11057380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11057381	0.82[CEU][hapmap]
rs11057383	0.82[CEU][hapmap]
rs11057385	0.88[ASN][1000 genomes]
rs12228611	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1317312	0.82[CEU][hapmap]
rs1882488	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1882489	0.82[CEU][hapmap]
rs1922258	0.81[CEU][hapmap]
rs7138100	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[ASN][1000 genomes]
rs7300162	0.93[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs7313897	0.82[CEU][hapmap]
rs7314963	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7959043	0.97[ASN][1000 genomes]
rs7960854	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7961179	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7962016	0.97[ASN][1000 genomes]
rs7980570	0.85[ASN][1000 genomes]
rs9669530	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1922257	MORN3	cis	parietal	SCAN
rs1922257	CCDC92	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124352200-124354200	Enhancers	Fetal Brain Male	brain
2	chr12:124352800-124354600	Enhancers	Fetal Brain Female	brain
3	chr12:124353400-124354600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr12:124353400-124354600	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr12:124353600-124354600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:124353800-124355200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links