Variant report

Variant	rs193440
Chromosome Location	chr14:71853293-71853294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71839504..71842114-chr14:71850336..71853311,2	MCF-7	breast:
2	chr14:71786431..71788612-chr14:71852698..71854488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10130652	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11628525	0.85[CHB][hapmap]
rs12878009	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12897119	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs193441	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs193442	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs193443	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2041330	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs2108048	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3088206	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36528	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36532	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36535	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41217	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41218	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41224	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41225	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41227	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41229	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4464023	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7141155	0.88[JPT][hapmap];0.86[YRI][hapmap]
rs7153726	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7154208	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8007271	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8007521	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8016217	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes]
rs8023058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917391	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71837400-71855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:71844800-71858600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:71845000-71865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:71845200-71854400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:71845800-71865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:71846000-71855600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:71846200-71857400	Weak transcription	Primary B cells from cord blood	blood
8	chr14:71847400-71854000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:71847400-71855800	Weak transcription	NH-A	brain
10	chr14:71847600-71854600	Weak transcription	Hela-S3	cervix
11	chr14:71847600-71867600	Weak transcription	Fetal Lung	lung
12	chr14:71847600-71869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:71848600-71867000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:71849800-71855800	Enhancers	Stomach Mucosa	stomach
15	chr14:71849800-71872200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:71850600-71861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:71850800-71855200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:71850800-71855200	Weak transcription	Placenta	Placenta
19	chr14:71850800-71862000	Weak transcription	Aorta	Aorta
20	chr14:71851200-71854600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:71851200-71855200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:71851200-71860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:71851200-71874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:71851400-71854800	Weak transcription	NHEK	skin
25	chr14:71851400-71878200	Weak transcription	Pancreas	Pancrea
26	chr14:71851600-71860800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:71851800-71855400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:71851800-71858400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:71851800-71860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:71852000-71858600	Weak transcription	Spleen	Spleen
31	chr14:71852200-71854000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:71852200-71854400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:71852200-71854400	Weak transcription	Fetal Heart	heart
34	chr14:71852200-71860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:71852200-71860800	Weak transcription	Osteobl	bone
36	chr14:71852400-71854400	Weak transcription	GM12878-XiMat	blood
37	chr14:71853000-71860400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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