Variant report

Variant	rs36535
Chromosome Location	chr14:71907198-71907199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71899659..71902752-chr14:71906518..71909457,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10129301	0.80[EUR][1000 genomes]
rs10130652	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143346	0.81[ASN][1000 genomes]
rs10147863	0.82[YRI][hapmap]
rs11628525	0.85[CHB][hapmap]
rs12878009	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897119	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897977	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs193440	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs193441	0.84[AMR][1000 genomes]
rs193442	0.82[AMR][1000 genomes]
rs193443	0.84[AMR][1000 genomes]
rs2041330	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2108048	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3088206	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36528	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36532	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41217	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs41218	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41219	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41224	0.85[AMR][1000 genomes]
rs41225	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41227	0.86[AMR][1000 genomes]
rs41229	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4464023	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899396	0.83[EUR][1000 genomes]
rs7141155	0.91[YRI][hapmap]
rs7153726	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7154208	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007271	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8007521	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016217	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs8023058	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs917391	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3388109	chr14:71888248-71908062	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
2	chr14:71892800-71907600	Weak transcription	Dnd41	blood
3	chr14:71898000-71909400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
5	chr14:71900200-71909000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:71900200-71915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:71900400-71915400	Weak transcription	Gastric	stomach
8	chr14:71901400-71915800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:71904000-71907400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:71904200-71908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:71904200-71908400	Enhancers	Hela-S3	cervix
12	chr14:71904400-71907200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr14:71904400-71907200	Enhancers	NH-A	brain
14	chr14:71905000-71907200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:71905000-71908400	Enhancers	Colon Smooth Muscle	Colon
16	chr14:71905200-71907200	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:71905200-71908400	Enhancers	Fetal Heart	heart
18	chr14:71905200-71911000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr14:71905400-71907200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:71905400-71907200	Enhancers	Adipose Nuclei	Adipose
21	chr14:71905600-71908800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:71905600-71919200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr14:71905800-71907200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:71905800-71908200	Active TSS	Brain Anterior Caudate	brain
25	chr14:71905800-71909000	Weak transcription	Fetal Brain Male	brain
26	chr14:71905800-71910600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:71905800-71912600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:71905800-71915400	Weak transcription	Small Intestine	intestine
29	chr14:71906000-71907800	Weak transcription	Fetal Stomach	stomach
30	chr14:71906000-71908000	Weak transcription	Esophagus	oesophagus
31	chr14:71906000-71908200	Weak transcription	Aorta	Aorta
32	chr14:71906000-71910400	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:71906000-71910600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr14:71906000-71910800	Weak transcription	Ovary	ovary
35	chr14:71906000-71910800	Weak transcription	Spleen	Spleen
36	chr14:71906200-71907200	Enhancers	Stomach Smooth Muscle	stomach
37	chr14:71906200-71907400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:71906200-71908400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:71906200-71910600	Weak transcription	Brain Substantia Nigra	brain
40	chr14:71906400-71907200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr14:71906400-71907200	Enhancers	Osteobl	bone
42	chr14:71906400-71907800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:71906400-71908400	Enhancers	NHDF-Ad	bronchial
44	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:71906600-71907200	Strong transcription	Primary T cells from cord blood	blood
46	chr14:71906600-71912600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:71906800-71907200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:71906800-71908000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr14:71906800-71908400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:71906800-71910400	Weak transcription	GM12878-XiMat	blood

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