Variant report

Variant	rs8007521
Chromosome Location	chr14:71888499-71888500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71786410..71788050-chr14:71885965..71888835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10130652	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10147863	0.87[YRI][hapmap]
rs11628525	0.85[CHB][hapmap]
rs12878009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12897119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12897977	0.82[EUR][1000 genomes]
rs193440	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs193441	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs193442	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs193443	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2041330	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2108048	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3088206	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36528	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36532	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36535	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41217	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41218	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41219	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41224	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41225	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41227	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41229	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4464023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7141155	0.82[CEU][hapmap];0.86[YRI][hapmap]
rs7153726	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7154208	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007271	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8016217	0.92[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs8023058	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs917391	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3388109	chr14:71888248-71908062	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71866000-71889000	Weak transcription	Dnd41	blood
2	chr14:71867200-71892200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:71868200-71891400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:71869600-71904200	Weak transcription	Hela-S3	cervix
5	chr14:71870600-71891000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr14:71871600-71899600	Weak transcription	Primary B cells from cord blood	blood
7	chr14:71874400-71897000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:71875800-71889400	Weak transcription	Fetal Kidney	kidney
9	chr14:71875800-71897400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:71876000-71891000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:71876200-71889000	Weak transcription	HSMM	muscle
12	chr14:71876200-71890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:71876200-71896800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:71877800-71888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:71878200-71891000	Weak transcription	Liver	Liver
16	chr14:71878400-71891400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:71878600-71888600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:71878600-71897200	Weak transcription	Thymus	Thymus
19	chr14:71878600-71905200	Weak transcription	Aorta	Aorta
20	chr14:71881200-71899000	Weak transcription	Fetal Intestine Small	intestine
21	chr14:71882400-71904400	Weak transcription	NH-A	brain
22	chr14:71882800-71891200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:71883400-71891000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:71883600-71888600	Weak transcription	Osteobl	bone
25	chr14:71883800-71890200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:71883800-71890800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:71883800-71892200	Weak transcription	HMEC	breast
28	chr14:71883800-71905800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:71884000-71889000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:71884000-71889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:71884000-71890000	Weak transcription	NHEK	skin
32	chr14:71884000-71897200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:71885600-71889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:71885800-71888800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:71885800-71890200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr14:71885800-71890800	Weak transcription	NHDF-Ad	bronchial
37	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
38	chr14:71886000-71888600	Weak transcription	K562	blood
39	chr14:71887000-71889800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr14:71887000-71891200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:71887200-71890800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr14:71887400-71889400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:71888200-71889600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr14:71888400-71888800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:71888400-71888800	Strong transcription	GM12878-XiMat	blood
46	chr14:71888400-71889600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:71888400-71889800	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links