Variant report

Variant	rs41218
Chromosome Location	chr14:71839921-71839922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71786183..71790098-chr14:71837294..71842439,6	MCF-7	breast:
2	chr14:71786410..71789400-chr14:71837882..71840827,2	MCF-7	breast:
3	chr14:71839504..71842114-chr14:71850336..71853311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130652	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12878009	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12897119	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs193440	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs193441	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs193442	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs193443	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2041330	0.85[EUR][1000 genomes]
rs2108048	0.81[EUR][1000 genomes]
rs3088206	0.87[EUR][1000 genomes]
rs36528	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36532	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36535	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41217	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41219	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41224	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41225	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41227	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41229	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4464023	0.81[EUR][1000 genomes]
rs7153726	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7154208	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8007271	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8007521	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8016217	0.88[EUR][1000 genomes]
rs8023058	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs917391	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71831800-71840600	Weak transcription	Spleen	Spleen
2	chr14:71832200-71843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:71833200-71843800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:71833600-71840000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:71836600-71840400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:71837200-71840600	Enhancers	Stomach Mucosa	stomach
7	chr14:71837400-71841600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:71837400-71855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:71837800-71843600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71838200-71840200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:71838800-71840000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:71838800-71840000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr14:71838800-71840200	Enhancers	HMEC	breast
14	chr14:71839000-71840200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:71839000-71844800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:71839000-71845200	Weak transcription	Brain Angular Gyrus	brain
17	chr14:71839200-71843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:71839400-71840600	Weak transcription	Fetal Heart	heart
19	chr14:71839600-71840000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:71839600-71840000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:71839600-71840400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:71839600-71840400	Enhancers	Placenta	Placenta
23	chr14:71839600-71840600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:71839600-71840600	Weak transcription	Brain Anterior Caudate	brain
25	chr14:71839600-71840800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:71839600-71840800	Enhancers	HUVEC	blood vessel
27	chr14:71839600-71841600	Enhancers	Osteobl	bone
28	chr14:71839600-71844600	Weak transcription	Primary B cells from cord blood	blood
29	chr14:71839600-71844600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:71839600-71844600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:71839600-71844800	Weak transcription	Hela-S3	cervix
32	chr14:71839600-71845600	Weak transcription	Small Intestine	intestine
33	chr14:71839600-71847000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:71839600-71847000	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:71839600-71847000	Weak transcription	HSMMtube	muscle
36	chr14:71839800-71840600	Weak transcription	HSMM	muscle
37	chr14:71839800-71840800	Enhancers	NHEK	skin
38	chr14:71839800-71843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:71839800-71845000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links