Variant report

Variant	rs36532
Chromosome Location	chr14:71923338-71923339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71915843..71917991-chr14:71921566..71923548,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129301	0.81[ASN][1000 genomes]
rs10130652	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143346	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10147863	0.82[YRI][hapmap]
rs11628525	0.90[CHB][hapmap]
rs12878009	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897119	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897977	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193440	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2041330	0.84[CEU][hapmap]
rs2108048	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3088206	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36528	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36535	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41217	0.87[ASN][1000 genomes]
rs41218	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41229	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4464023	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899396	0.89[EUR][1000 genomes]
rs6574014	0.85[EUR][1000 genomes]
rs7141155	0.80[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap]
rs7153726	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7154208	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007521	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016217	0.87[CEU][hapmap];0.84[CHB][hapmap]
rs8023058	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs917391	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv976298	chr14:71917066-71925965	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
2	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:71907000-71930600	Weak transcription	HSMM	muscle
5	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
6	chr14:71913200-71927000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:71914000-71927000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:71915800-71938600	Weak transcription	Small Intestine	intestine
9	chr14:71916400-71932000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:71916600-71932800	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:71919800-71926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:71919800-71926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:71920000-71927600	Weak transcription	GM12878-XiMat	blood
14	chr14:71920200-71926400	Weak transcription	HMEC	breast
15	chr14:71920200-71931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:71921600-71923800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:71921800-71927000	Weak transcription	Stomach Mucosa	stomach
18	chr14:71921800-71927600	Weak transcription	Aorta	Aorta
19	chr14:71921800-71930000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:71921800-71933200	Weak transcription	Osteobl	bone
21	chr14:71921800-71940600	Weak transcription	Spleen	Spleen
22	chr14:71922000-71925800	Weak transcription	NHEK	skin
23	chr14:71922000-71926400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:71922000-71930600	Weak transcription	Hela-S3	cervix
25	chr14:71922000-71931800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:71922000-71933000	Weak transcription	Fetal Lung	lung
27	chr14:71922200-71929400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:71922200-71929400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:71922200-71932800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr14:71922200-71944600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:71922400-71924000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr14:71923200-71923400	Enhancers	A549	lung

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