Variant report

Variant	rs195443
Chromosome Location	chr6:37364629-37364630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37358839..37361395-chr6:37362203..37365759,3	K562	blood:
2	chr6:37360851..37366241-chr6:37366774..37371728,6	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11964425	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13216211	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195429	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195434	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2269053	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs369329	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406475	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470571	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
4	chr6:37356200-37367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37359000-37365000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
7	chr6:37359200-37365000	Weak transcription	A549	lung
8	chr6:37359200-37367000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:37359200-37367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:37359400-37368400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:37359600-37364800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:37359600-37374000	Weak transcription	NHEK	skin
13	chr6:37359800-37365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37360600-37364800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:37360600-37366200	Weak transcription	Brain Germinal Matrix	brain
16	chr6:37360800-37367000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:37361000-37364800	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:37361000-37364800	Weak transcription	Thymus	Thymus
19	chr6:37361000-37365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:37361000-37365200	Weak transcription	HSMM	muscle
21	chr6:37361000-37365600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:37361200-37364800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:37361200-37364800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:37361200-37368400	Weak transcription	Gastric	stomach
25	chr6:37361600-37364800	Weak transcription	HepG2	liver
26	chr6:37361800-37364800	Weak transcription	Aorta	Aorta
27	chr6:37361800-37365000	Weak transcription	Dnd41	blood
28	chr6:37362000-37364800	Weak transcription	Esophagus	oesophagus
29	chr6:37362000-37365800	Weak transcription	Primary B cells from cord blood	blood
30	chr6:37362200-37365600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:37362200-37368600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:37362400-37364800	Weak transcription	GM12878-XiMat	blood
33	chr6:37362800-37368600	Enhancers	Placenta	Placenta
34	chr6:37362800-37374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:37363000-37364800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:37363000-37364800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:37363000-37364800	Weak transcription	HSMMtube	muscle
38	chr6:37363200-37364800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:37363200-37364800	Weak transcription	Brain Anterior Caudate	brain
40	chr6:37363200-37365800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:37363400-37365000	Weak transcription	Lung	lung
42	chr6:37363400-37365200	Weak transcription	Primary T cells from cord blood	blood
43	chr6:37363400-37365200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:37363400-37365600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr6:37363400-37368400	Weak transcription	Pancreas	Pancrea
46	chr6:37363600-37365200	Weak transcription	Brain Substantia Nigra	brain
47	chr6:37363600-37365200	Weak transcription	Right Ventricle	heart
48	chr6:37363600-37365400	Weak transcription	Fetal Stomach	stomach
49	chr6:37363600-37365600	Weak transcription	Fetal Brain Female	brain
50	chr6:37363600-37365800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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