Variant report

Variant	rs62406475
Chromosome Location	chr6:37365390-37365391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37364870..37368113-chr6:37400250..37402090,3	K562	blood:
2	chr6:37358839..37361395-chr6:37362203..37365759,3	K562	blood:
3	chr6:37364657..37367034-chr6:37394152..37396378,2	K562	blood:
4	chr6:37360851..37366241-chr6:37366774..37371728,6	K562	blood:
5	chr6:37361153..37363710-chr6:37365153..37366702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11964425	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13216211	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195429	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs195434	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs195443	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35409514	0.88[EUR][1000 genomes]
rs369329	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470571	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
3	chr6:37356200-37367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
5	chr6:37359200-37367000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:37359200-37367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:37359400-37368400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:37359600-37374000	Weak transcription	NHEK	skin
9	chr6:37359800-37365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:37360600-37366200	Weak transcription	Brain Germinal Matrix	brain
11	chr6:37360800-37367000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:37361000-37365600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:37361200-37368400	Weak transcription	Gastric	stomach
14	chr6:37362000-37365800	Weak transcription	Primary B cells from cord blood	blood
15	chr6:37362200-37365600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:37362200-37368600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:37362800-37368600	Enhancers	Placenta	Placenta
18	chr6:37362800-37374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:37363200-37365800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:37363400-37365600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:37363400-37368400	Weak transcription	Pancreas	Pancrea
22	chr6:37363600-37365400	Weak transcription	Fetal Stomach	stomach
23	chr6:37363600-37365600	Weak transcription	Fetal Brain Female	brain
24	chr6:37363600-37365800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37363600-37368000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:37363800-37365600	Weak transcription	K562	blood
27	chr6:37363800-37365800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:37363800-37367000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:37363800-37373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:37363800-37374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37364800-37368600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:37365000-37365400	Weak transcription	HepG2	liver
33	chr6:37365000-37367600	Weak transcription	Right Atrium	heart

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