Variant report

Variant	rs369329
Chromosome Location	chr6:37352166-37352167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37292183..37294641-chr6:37349694..37352323,2	MCF-7	breast:
2	chr6:37327202..37330081-chr6:37352156..37354219,2	K562	blood:
3	chr6:37337589..37340258-chr6:37350872..37353770,2	MCF-7	breast:
4	chr6:37345758..37347538-chr6:37350985..37352600,2	K562	blood:

Variant related genes	Relation type
ENSG00000239953	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11964425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216211	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs195429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs195434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs195443	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173314	0.82[JPT][hapmap]
rs2269053	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62406475	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470571	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:37328000-37361800	Strong transcription	Dnd41	blood
5	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
8	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
13	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
14	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
15	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
20	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
21	chr6:37339600-37354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:37339600-37358600	Weak transcription	Gastric	stomach
23	chr6:37339800-37355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:37339800-37358200	Weak transcription	Pancreas	Pancrea
25	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:37340400-37358800	Weak transcription	Fetal Kidney	kidney
27	chr6:37341200-37352600	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:37341400-37359400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:37342000-37352800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr6:37342200-37352600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:37342200-37353000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:37342200-37353000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:37342400-37362000	Strong transcription	Adipose Nuclei	Adipose
34	chr6:37342600-37358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:37342800-37353800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:37343000-37363600	Strong transcription	Fetal Stomach	stomach
37	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:37343400-37358200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:37343600-37355400	Strong transcription	Fetal Intestine Small	intestine
40	chr6:37344000-37357200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:37344000-37361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:37344400-37354200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:37345400-37352200	Weak transcription	Esophagus	oesophagus
44	chr6:37345400-37352600	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:37345400-37352600	Strong transcription	Fetal Thymus	thymus
46	chr6:37345600-37363400	Weak transcription	HUVEC	blood vessel
47	chr6:37346000-37354000	Weak transcription	Fetal Brain Female	brain
48	chr6:37346000-37354000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:37346000-37362400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:37346200-37355200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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