Variant report

Variant	rs2269053
Chromosome Location	chr6:37350056-37350057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37292183..37294641-chr6:37349694..37352323,2	MCF-7	breast:
2	chr6:37349442..37350259-chr6:37621444..37622102,2	K562	blood:
3	chr6:37347893..37350321-chr6:37453148..37456084,2	K562	blood:
4	chr6:37349404..37350177-chr6:37452710..37453695,3	MCF-7	breast:
5	chr6:37327095..37329230-chr6:37349262..37350980,2	K562	blood:
6	chr6:37349539..37351113-chr6:37394191..37396752,2	K562	blood:
7	chr6:37348008..37350408-chr6:37358756..37360688,2	K562	blood:
8	chr6:37348302..37351113-chr6:37394191..37396575,2	K562	blood:
9	chr6:37321746..37325231-chr6:37348140..37351818,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction
ENSG00000239953	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11964425	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13216211	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195429	0.89[CEU][hapmap];0.92[CHB][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs195434	0.89[CEU][hapmap];0.92[CHB][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs195443	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2173314	0.86[JPT][hapmap]
rs35409514	0.88[EUR][1000 genomes]
rs369329	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62406475	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470571	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:37328000-37361800	Strong transcription	Dnd41	blood
6	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
9	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
14	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
16	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
17	chr6:37337600-37352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
19	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
24	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
25	chr6:37339600-37352000	Weak transcription	Colonic Mucosa	Colon
26	chr6:37339600-37354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:37339600-37358600	Weak transcription	Gastric	stomach
28	chr6:37339800-37355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:37339800-37358200	Weak transcription	Pancreas	Pancrea
30	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:37340200-37350600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:37340400-37358800	Weak transcription	Fetal Kidney	kidney
33	chr6:37341200-37352600	Strong transcription	Fetal Muscle Leg	muscle
34	chr6:37341400-37359400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:37342000-37351400	Strong transcription	Hela-S3	cervix
36	chr6:37342000-37352800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:37342200-37351000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:37342200-37351000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:37342200-37352600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:37342200-37353000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:37342200-37353000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:37342400-37350600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:37342400-37362000	Strong transcription	Adipose Nuclei	Adipose
44	chr6:37342600-37358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:37342800-37353800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:37343000-37363600	Strong transcription	Fetal Stomach	stomach
47	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:37343200-37350200	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:37343400-37358200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:37343600-37352000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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