Variant report

Variant	rs1954899
Chromosome Location	chr8:105012670-105012671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10089467	0.82[CEU][hapmap]
rs10089978	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10093057	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10103621	0.88[CEU][hapmap]
rs10104167	0.97[ASN][1000 genomes]
rs10108247	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10453058	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505052	0.91[ASN][1000 genomes]
rs10955333	0.91[ASN][1000 genomes]
rs10955336	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12156323	0.91[ASN][1000 genomes]
rs12335221	0.97[ASN][1000 genomes]
rs12542692	0.91[ASN][1000 genomes]
rs12548406	0.97[ASN][1000 genomes]
rs12550348	0.91[ASN][1000 genomes]
rs12679980	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16870816	0.89[EUR][1000 genomes]
rs17238250	0.91[ASN][1000 genomes]
rs17238501	0.91[ASN][1000 genomes]
rs17239114	0.97[ASN][1000 genomes]
rs17817357	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1954898	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023025	0.97[ASN][1000 genomes]
rs2023026	0.97[ASN][1000 genomes]
rs2023028	0.91[ASN][1000 genomes]
rs2023030	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023034	0.97[ASN][1000 genomes]
rs2096978	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2132644	0.91[ASN][1000 genomes]
rs28826404	0.97[ASN][1000 genomes]
rs28873475	0.91[ASN][1000 genomes]
rs2935296	0.82[CEU][hapmap]
rs3919234	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734085	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734738	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55880815	0.90[EUR][1000 genomes]
rs56123555	0.91[ASN][1000 genomes]
rs58139259	0.91[ASN][1000 genomes]
rs61229244	0.91[ASN][1000 genomes]
rs7009080	0.97[ASN][1000 genomes]
rs7357460	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7357464	0.97[ASN][1000 genomes]
rs73699009	0.91[ASN][1000 genomes]
rs73699011	0.91[ASN][1000 genomes]
rs7829175	0.88[CEU][hapmap]
rs7840870	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7841847	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7844763	0.97[ASN][1000 genomes]
rs9802039	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv891248	chr8:104956705-105043211	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465753	chr8:104956705-105136549	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv611833	chr8:104956705-105136549	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv1824479	chr8:104961899-105032765	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv891249	chr8:104963377-105077013	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105002400-105025600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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