Variant report

Variant	rs3919234
Chromosome Location	chr8:104989880-104989881
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10089467	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs10089978	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091544	0.86[ASN][1000 genomes]
rs10093057	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10103621	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10108247	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453058	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10955332	0.94[ASN][1000 genomes]
rs10955334	0.91[ASN][1000 genomes]
rs10955336	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12155936	0.94[ASN][1000 genomes]
rs12156016	0.94[ASN][1000 genomes]
rs12675494	0.90[ASN][1000 genomes]
rs12679980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12682214	0.94[ASN][1000 genomes]
rs1402442	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs16870792	0.89[ASN][1000 genomes]
rs16870816	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17817357	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1954898	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1954899	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2023030	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096978	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2173081	0.94[ASN][1000 genomes]
rs2935296	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs4446700	0.90[ASN][1000 genomes]
rs4734085	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734738	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55880815	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56232122	0.94[ASN][1000 genomes]
rs56369021	0.94[ASN][1000 genomes]
rs58345884	0.94[ASN][1000 genomes]
rs6986683	0.95[ASN][1000 genomes]
rs6986692	0.89[ASN][1000 genomes]
rs72681360	0.94[ASN][1000 genomes]
rs7357460	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829175	0.88[CEU][hapmap]
rs7836680	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7840870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7841847	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650010	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9650011	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv891248	chr8:104956705-105043211	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465753	chr8:104956705-105136549	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv611833	chr8:104956705-105136549	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv1824479	chr8:104961899-105032765	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv891249	chr8:104963377-105077013	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv819897	chr8:104987702-105002005	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104975000-104993600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:104977400-104991800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:104978000-104991800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:104978400-104992200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:104983200-104992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:104983200-104994000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:104983400-104993600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:104985200-104992200	Weak transcription	Brain Anterior Caudate	brain
9	chr8:104988400-104990000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:104988400-104991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:104988400-104991800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:104988400-104992200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:104988400-104992200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:104988400-104994000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:104988600-104991600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:104988600-104992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:104989200-104992000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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