Variant report

Variant	rs6986683
Chromosome Location	chr8:104932271-104932272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10089467	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs10089978	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10091544	0.87[ASN][1000 genomes]
rs10093057	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10103621	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10104167	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10108247	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10955332	0.98[ASN][1000 genomes]
rs10955334	0.95[ASN][1000 genomes]
rs10955336	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12155936	0.98[ASN][1000 genomes]
rs12156016	0.98[ASN][1000 genomes]
rs12156323	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12335221	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12542692	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12544699	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs12675494	0.95[ASN][1000 genomes]
rs12679980	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12682214	0.98[ASN][1000 genomes]
rs1402442	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1533733	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1533734	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs16870792	0.93[ASN][1000 genomes]
rs16870816	0.97[ASN][1000 genomes]
rs17238250	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17238501	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17239114	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17817357	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2023028	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2023030	0.81[AFR][1000 genomes]
rs2023034	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2096978	0.88[AFR][1000 genomes]
rs2173081	0.98[ASN][1000 genomes]
rs28826404	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28873475	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2935296	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs3919234	0.95[ASN][1000 genomes]
rs4446700	0.95[ASN][1000 genomes]
rs4734738	0.88[AFR][1000 genomes]
rs55880815	0.97[ASN][1000 genomes]
rs56123555	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56232122	0.98[ASN][1000 genomes]
rs56369021	0.98[ASN][1000 genomes]
rs58345884	0.98[ASN][1000 genomes]
rs61229244	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6986692	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7009080	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72681360	0.98[ASN][1000 genomes]
rs7357460	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7357464	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73699009	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73699011	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7836680	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7840870	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7841847	0.92[AFR][1000 genomes]
rs7844763	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9297340	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs9650010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9650011	0.95[ASN][1000 genomes]
rs9802039	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:104919600-104938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104924200-104938600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:104929400-104949600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:104930000-104949400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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