Variant report

Variant	rs10108247
Chromosome Location	chr8:104945982-104945983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104945753..104947544-chr8:104999072..105000833,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10089467	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10089978	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091544	0.89[ASN][1000 genomes]
rs10093057	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103621	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap]
rs10453058	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10955332	0.97[ASN][1000 genomes]
rs10955334	0.94[ASN][1000 genomes]
rs10955336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155936	0.97[ASN][1000 genomes]
rs12156016	0.97[ASN][1000 genomes]
rs12544699	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs12675494	0.94[ASN][1000 genomes]
rs12679980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682214	0.97[ASN][1000 genomes]
rs1402442	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs1533733	0.86[JPT][hapmap]
rs1533734	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs16870792	0.92[ASN][1000 genomes]
rs16870816	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17817357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954898	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1954899	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2023030	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2096978	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2173081	0.97[ASN][1000 genomes]
rs2935296	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3919234	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446700	0.94[ASN][1000 genomes]
rs4734085	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4734738	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55880815	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56232122	0.97[ASN][1000 genomes]
rs56369021	0.97[ASN][1000 genomes]
rs58345884	0.97[ASN][1000 genomes]
rs6986683	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6986692	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72681360	0.97[ASN][1000 genomes]
rs7357460	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7829175	0.88[CEU][hapmap];0.86[MEX][hapmap]
rs7836680	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7840870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841847	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9297340	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9650010	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9650011	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104929400-104949600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:104930000-104949400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:104938000-104949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:104939000-104948600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:104939000-104951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:104939000-104955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:104939400-104959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:104945000-104948800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:104945800-104946200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:104945800-104949400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links