Variant report

Variant	rs16870816
Chromosome Location	chr8:104908629-104908630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10089467	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs10089978	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091544	0.90[ASN][1000 genomes]
rs10093057	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103621	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs10108247	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10453058	0.91[EUR][1000 genomes]
rs10955332	0.98[ASN][1000 genomes]
rs10955334	0.95[ASN][1000 genomes]
rs10955336	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155936	0.98[ASN][1000 genomes]
rs12156016	0.98[ASN][1000 genomes]
rs12544699	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12675494	0.95[ASN][1000 genomes]
rs12679980	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12682214	0.98[ASN][1000 genomes]
rs1402442	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1533733	0.87[JPT][hapmap]
rs1533734	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs16870792	0.94[ASN][1000 genomes]
rs17817357	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1954898	0.89[EUR][1000 genomes]
rs1954899	0.89[EUR][1000 genomes]
rs2023030	0.92[EUR][1000 genomes]
rs2096978	0.92[EUR][1000 genomes]
rs2173081	0.98[ASN][1000 genomes]
rs2935296	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs3919234	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4446700	0.95[ASN][1000 genomes]
rs4734085	0.89[EUR][1000 genomes]
rs4734738	0.91[EUR][1000 genomes]
rs55880815	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232122	0.98[ASN][1000 genomes]
rs56369021	0.98[ASN][1000 genomes]
rs58345884	0.98[ASN][1000 genomes]
rs6986683	0.97[ASN][1000 genomes]
rs6986692	0.90[ASN][1000 genomes]
rs72681360	0.98[ASN][1000 genomes]
rs7357460	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7829175	0.88[CEU][hapmap]
rs7836680	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7840870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841847	0.93[EUR][1000 genomes]
rs9297340	1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs9650010	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9650011	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv3479715	chr8:104906252-104912803	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3479717	chr8:104906257-104912822	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3479716	chr8:104906319-104912742	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3423636	chr8:104906321-104912711	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3479719	chr8:104906382-104912703	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv12257	chr8:104906431-104912684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104897200-104914200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:104898200-104919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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