Variant report

Variant	rs7357460
Chromosome Location	chr8:104976725-104976726
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10089978	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091544	0.86[ASN][1000 genomes]
rs10093057	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108247	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453058	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10955332	0.94[ASN][1000 genomes]
rs10955334	0.91[ASN][1000 genomes]
rs10955336	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12155936	0.94[ASN][1000 genomes]
rs12156016	0.94[ASN][1000 genomes]
rs12675494	0.90[ASN][1000 genomes]
rs12679980	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12682214	0.94[ASN][1000 genomes]
rs16870792	0.89[ASN][1000 genomes]
rs16870816	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17817357	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1954898	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1954899	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2023030	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096978	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2173081	0.94[ASN][1000 genomes]
rs3919234	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4446700	0.90[ASN][1000 genomes]
rs4734085	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734738	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55880815	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56232122	0.94[ASN][1000 genomes]
rs56369021	0.94[ASN][1000 genomes]
rs58345884	0.94[ASN][1000 genomes]
rs6986683	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6986692	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72681360	0.94[ASN][1000 genomes]
rs7840870	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7841847	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650010	0.90[ASN][1000 genomes]
rs9650011	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv891248	chr8:104956705-105043211	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465753	chr8:104956705-105136549	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv611833	chr8:104956705-105136549	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv1824479	chr8:104961899-105032765	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv891249	chr8:104963377-105077013	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104952000-104977000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:104970000-104987600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104974800-104977600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr8:104975000-104993600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:104975400-104977800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:104975600-104976800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:104975800-104977000	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr8:104976000-104977400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr8:104976000-104977400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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