Variant report

Variant	rs1980425
Chromosome Location	chr21:16270422-16270423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1002460	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403841	0.86[CEU][hapmap]
rs2822971	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2822972	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2822973	0.88[EUR][1000 genomes]
rs2822974	0.87[EUR][1000 genomes]
rs2822975	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822981	0.85[CEU][hapmap]
rs7279246	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7279396	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8134307	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8134602	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9653708	0.86[EUR][1000 genomes]
rs9982221	0.86[EUR][1000 genomes]
rs9983796	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16262000-16284200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16266000-16272400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr21:16266400-16272800	Weak transcription	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links