Variant report

Variant	rs198820
Chromosome Location	chr6:26124243-26124244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:493)
CpG islands
(count:0)
Chromatin interactive
region (count:92)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:493 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:26123157-26124911	K562	blood:	n/a	chr6:26124378-26124387 chr6:26124376-26124386
2	REST	chr6:26123892-26124259	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr6:26122615-26125565	GM12878	blood:	n/a	n/a
4	NFYA	chr6:26123925-26124511	Hela-S3	cervix:	n/a	chr6:26124327-26124342 chr6:26124327-26124340 chr6:26124327-26124341 chr6:26124326-26124338 chr6:26124327-26124342
5	SIN3AK20	chr6:26122942-26125097	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr6:26123040-26124613	A549	lung:	n/a	n/a
7	TAF1	chr6:26123741-26124799	A549	lung:	n/a	n/a
8	MAX	chr6:26124091-26124710	SK-N-SH	brain:	n/a	n/a
9	RFX5	chr6:26124196-26124437	HepG2	liver:	n/a	chr6:26124352-26124367
10	SP1	chr6:26122993-26124689	GM12878	blood:	n/a	chr6:26124289-26124310 chr6:26124328-26124349
11	NFIC	chr6:26122660-26125160	HepG2	liver:	n/a	n/a
12	POLR2A	chr6:26122702-26125028	Gliobla	brain:	n/a	n/a
13	MXI1	chr6:26122292-26127660	SK-N-SH	brain:	n/a	n/a
14	POLR2A	chr6:26122842-26126800	U87	brain:	n/a	n/a
15	ELF1	chr6:26122883-26125125	HCT-116	colon:	n/a	n/a
16	MBD4	chr6:26123812-26125542	HepG2	liver:	n/a	n/a
17	ARID3A	chr6:26122827-26124601	K562	blood:	n/a	chr6:26124490-26124502
18	POU2F2	chr6:26123015-26124966	GM12891	blood:	n/a	chr6:26124191-26124202 chr6:26124270-26124277 chr6:26124192-26124204 chr6:26124269-26124278 chr6:26124266-26124280 chr6:26124268-26124280 chr6:26124192-26124202 chr6:26124269-26124277 chr6:26124193-26124201 chr6:26124268-26124278 chr6:26124269-26124279 chr6:26124190-26124205 chr6:26124266-26124281 chr6:26124269-26124279
19	TCF12	chr6:26122459-26125586	A549	lung:	n/a	chr6:26125022-26125029
20	MAX	chr6:26122801-26124876	GM12878	blood:	n/a	n/a
21	POLR2A	chr6:26123071-26124892	HepG2	liver:	n/a	n/a
22	SP1	chr6:26123815-26124665	H1-hESC	embryonic stem cell:	n/a	chr6:26124289-26124310 chr6:26124328-26124349
23	IRF4	chr6:26123656-26124262	GM12878	blood:	n/a	n/a
24	ZBTB33	chr6:26123173-26124884	GM12878	blood:	n/a	chr6:26124412-26124427
25	MAX	chr6:26122598-26125340	A549	lung:	n/a	n/a
26	SIN3AK20	chr6:26124018-26124623	SK-N-SH	brain:	n/a	n/a
27	FOXA2	chr6:26123080-26124732	HepG2	liver:	n/a	chr6:26124402-26124414
28	FOSL2	chr6:26123066-26124899	HepG2	liver:	n/a	n/a
29	PML	chr6:26122751-26126510	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:26122292-26127005	HepG2	liver:	n/a	n/a
31	CHD2	chr6:26122840-26124986	GM12878	blood:	n/a	n/a
32	YY1	chr6:26124003-26124535	HCT-116	colon:	n/a	chr6:26124378-26124387 chr6:26124376-26124386
33	ELF1	chr6:26122951-26124890	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:26123011-26125353	GM12878	blood:	n/a	n/a
35	FOS	chr6:26124083-26124459	MCF10A-Er-Src	breast:	n/a	n/a
36	CEBPB	chr6:26123855-26124636	ECC-1	luminal epithelium:	n/a	n/a
37	FOXA1	chr6:26122964-26124745	HepG2	liver:	n/a	chr6:26124402-26124414
38	E2F4	chr6:26124050-26124624	MCF10A-Er-Src	breast:	n/a	chr6:26124329-26124338 chr6:26124490-26124502 chr6:26124514-26124525
39	POLR2A	chr6:26122637-26126581	HepG2	liver:	n/a	n/a
40	RELA	chr6:26122919-26124971	GM19193	blood:	n/a	n/a
41	POLR2A	chr6:26122768-26126187	GM12891	blood:	n/a	n/a
42	POLR2A	chr6:26122656-26125081	ECC-1	luminal epithelium:	n/a	n/a
43	ELF1	chr6:26123867-26124670	A549	lung:	n/a	n/a
44	ZBTB33	chr6:26122565-26124856	SK-N-SH	brain:	n/a	chr6:26124412-26124427
45	EP300	chr6:26123970-26124609	K562	blood:	n/a	n/a
46	EP300	chr6:26122749-26125234	ECC-1	luminal epithelium:	n/a	n/a
47	MAFK	chr6:26122972-26124711	Hela-S3	cervix:	n/a	chr6:26122993-26123009
48	REST	chr6:26123959-26124770	SK-N-SH	brain:	n/a	n/a
49	FOXA1	chr6:26123927-26124747	T-47D	breast:	n/a	chr6:26124402-26124414
50	POLR2A	chr6:26123045-26124947	MCF-7	breast:	n/a	n/a

No data

(count:92 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:2936453..2937117-chr6:26123746..26124250,2	Hela-S3	cervix:
2	chr1:36863025..36864018-chr6:26123957..26124512,2	Hela-S3	cervix:
3	chr6:26122965..26125832-chr6:27791721..27793805,2	K562	blood:
4	chr16:69759977..69760601-chr6:26123707..26124559,2	Hela-S3	cervix:
5	chr19:16682796..16683592-chr6:26123802..26124536,2	Hela-S3	cervix:
6	chr14:100705400..100707404-chr6:26123077..26125052,2	MCF-7	breast:
7	chr6:26033491..26034015-chr6:26123741..26124703,2	Hela-S3	cervix:
8	chr6:26123055..26124364-chr6:26216194..26217226,3	Hela-S3	cervix:
9	chr6:26043872..26047495-chr6:26122651..26127553,11	MCF-7	breast:
10	chr6:26121475..26124291-chr6:27775665..27777300,3	MCF-7	breast:
11	chr6:26121366..26126112-chr6:27111465..27116295,14	K562	blood:
12	chr3:159481372..159481986-chr6:26123997..26124942,2	Hela-S3	cervix:
13	chr16:68876883..68878785-chr6:26123434..26125107,2	MCF-7	breast:
14	chr19:3976743..3979264-chr6:26123642..26125833,2	K562	blood:
15	chr6:26123974..26124504-chr7:25164466..25164988,2	Hela-S3	cervix:
16	chr6:26123945..26125914-chr6:26596676..26599538,2	MCF-7	breast:
17	chr6:26120836..26126141-chr6:27110374..27116911,13	K562	blood:
18	chr6:26122973..26125036-chr6:27798042..27800567,2	MCF-7	breast:
19	chr3:184079797..184082444-chr6:26122729..26124672,2	K562	blood:
20	chr6:26122193..26124669-chr6:27781205..27782892,3	MCF-7	breast:
21	chr1:151512594..151513161-chr6:26123981..26124756,2	Hela-S3	cervix:
22	chr1:16533250..16534159-chr6:26124101..26124775,2	Hela-S3	cervix:
23	chr6:26123972..26124899-chr7:112090184..112091052,2	NB4	blood:
24	chr6:26123837..26124686-chr6:26157659..26158968,4	HCT-116	colon:
25	chr5:138940231..138940758-chr6:26124166..26124760,2	Hela-S3	cervix:
26	chr20:47894862..47895418-chr6:26123808..26124481,2	Hela-S3	cervix:
27	chr17:78120478..78121212-chr6:26123584..26124314,2	Hela-S3	cervix:
28	chr19:44645711..44646307-chr6:26124012..26124592,2	NB4	blood:
29	chr6:26122455..26127911-chr6:27777953..27784057,9	MCF-7	breast:
30	chr12:57039309..57039864-chr6:26123722..26124692,2	Hela-S3	cervix:
31	chr17:73201365..73201870-chr6:26123998..26124578,2	Hela-S3	cervix:
32	chr17:57913398..57916959-chr6:26122368..26124244,3	MCF-7	breast:
33	chr6:26123458..26125812-chr6:27833699..27835902,2	K562	blood:
34	chr3:101231583..101232129-chr6:26123800..26124666,2	Hela-S3	cervix:
35	chr16:2014296..2014921-chr6:26123891..26124486,2	Hela-S3	cervix:
36	chr4:129208995..129209861-chr6:26123953..26124669,2	Hela-S3	cervix:
37	chr6:26123783..26124437-chr6:30584503..30585120,2	NB4	blood:
38	chr3:156877450..156878143-chr6:26124036..26124672,2	Hela-S3	cervix:
39	chr15:60770486..60771483-chr6:26123946..26124861,2	Hela-S3	cervix:
40	chr6:26122958..26124980-chr6:26596151..26598779,2	K562	blood:
41	chr6:26123627..26125056-chr6:26157699..26158576,4	Hela-S3	cervix:
42	chr20:60756244..60758252-chr6:26123393..26125083,2	MCF-7	breast:
43	chr6:26123030..26125902-chr6:43596197..43598977,2	MCF-7	breast:
44	chr11:61158494..61161337-chr6:26123474..26125216,2	MCF-7	breast:
45	chr5:170814856..170815771-chr6:26123239..26124255,3	Hela-S3	cervix:
46	chr6:26123538..26126463-chr6:27839841..27841380,2	MCF-7	breast:
47	chr15:81287209..81289820-chr6:26122968..26124784,2	MCF-7	breast:
48	chr11:64007434..64010097-chr6:26123452..26125154,2	K562	blood:
49	chr1:161719167..161719902-chr6:26124018..26124853,2	Hela-S3	cervix:
50	chr5:131826235..131826994-chr6:26123977..26124876,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H2AC	TF binding region
HIST1H2BC	TF binding region
ENSG00000177410	Chromatin interaction
ENSG00000078043	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000068885	Chromatin interaction
ENSG00000075426	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000163435	Chromatin interaction
ENSG00000090889	Chromatin interaction
ENSG00000102977	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000164040	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000167216	Chromatin interaction
ENSG00000109736	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000124688	Chromatin interaction
ENSG00000198558	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000167658	Chromatin interaction
ENSG00000124201	Chromatin interaction
ENSG00000125618	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000085491	Chromatin interaction
ENSG00000120509	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000223764	Chromatin interaction
ENSG00000181817	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000124610	Chromatin interaction
ENSG00000245534	Chromatin interaction
ENSG00000141570	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000155463	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000140988	Chromatin interaction
ENSG00000104472	Chromatin interaction
ENSG00000113810	Chromatin interaction
ENSG00000125347	Chromatin interaction
ENSG00000181163	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000189223	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000182768	Chromatin interaction
ENSG00000263002	Chromatin interaction
ENSG00000184939	Chromatin interaction
ENSG00000250588	Chromatin interaction
ENSG00000131508	Chromatin interaction
ENSG00000163882	Chromatin interaction
ENSG00000138468	Chromatin interaction
ENSG00000128915	Chromatin interaction
ENSG00000141543	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000127526	Chromatin interaction
ENSG00000249673	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000172239	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000119392	Chromatin interaction
ENSG00000081721	Chromatin interaction
ENSG00000181019	Chromatin interaction
ENSG00000130340	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000165929	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000172432	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000142632	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000265855	Chromatin interaction
ENSG00000101181	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000110955	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000234678	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000205189	Chromatin interaction
ENSG00000108854	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000070081	Chromatin interaction
ENSG00000100811	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000006652	Chromatin interaction
ENSG00000103047	Chromatin interaction
ENSG00000125450	Chromatin interaction
ENSG00000187049	Chromatin interaction
ENSG00000258458	Chromatin interaction
ENSG00000172115	Chromatin interaction
ENSG00000173540	Chromatin interaction
ENSG00000124659	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10425	0.84[CHD][hapmap];0.88[GIH][hapmap]
rs1068554	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs115810	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12346	0.80[CEU][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs129129	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs1540275	0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap]
rs1540276	0.86[CHB][hapmap]
rs198801	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs198810	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198834	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198845	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs198847	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs198848	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198849	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198850	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198853	0.89[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs199737	0.86[CHB][hapmap]
rs199739	0.86[CHB][hapmap]
rs199741	0.86[CHB][hapmap]
rs199750	0.88[CHD][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs199751	0.86[CHB][hapmap]
rs199752	0.88[CHD][hapmap];0.86[MEX][hapmap]
rs199753	0.86[CHB][hapmap]
rs199754	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap]
rs2032447	0.80[CHD][hapmap];0.84[GIH][hapmap]
rs2213284	0.88[CHD][hapmap];0.93[GIH][hapmap];0.90[MEX][hapmap]
rs2230655	0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap]
rs4401650	0.84[CHD][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap]
rs442601	0.86[CHB][hapmap]
rs6901039	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs6922788	0.86[CHB][hapmap];0.87[CHD][hapmap];0.83[LWK][hapmap]
rs7756117	0.84[CHD][hapmap];0.84[GIH][hapmap]
rs807212	0.86[CHB][hapmap]
rs807214	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
8	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
9	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
10	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
11	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
12	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
13	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
14	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
15	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
16	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
17	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
18	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
19	nsv970082	chr6:26122853-26124775	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	151 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs198820	HIST1H2BC	cis	cerebellum	SCAN
rs198820	HIST1H4I	cis	cerebellum	SCAN
rs198820	HIST1H2BB	cis	parietal	SCAN
rs198820	HIST1H2AA	cis	parietal	SCAN
rs198820	HIST1H2AJ	cis	parietal	SCAN
rs198820	HIST1H2BM	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26121800-26125400	Active TSS	K562	blood
2	chr6:26122400-26127800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:26122600-26126800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:26122600-26127000	Active TSS	Brain Angular Gyrus	brain
5	chr6:26122600-26127000	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:26122600-26127000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:26122600-26127200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:26122600-26127200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:26122600-26127200	Active TSS	Fetal Kidney	kidney
10	chr6:26122600-26127400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:26122600-26127600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:26122600-26127600	Active TSS	Brain Substantia Nigra	brain
13	chr6:26122600-26127800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:26122600-26127800	Active TSS	Psoas Muscle	Psoas
15	chr6:26122600-26128400	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:26122800-26126800	Active TSS	Placenta	Placenta
17	chr6:26122800-26126800	Active TSS	Rectal Smooth Muscle	rectum
18	chr6:26122800-26127000	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:26122800-26127000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:26122800-26127200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:26122800-26127200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:26122800-26127200	Active TSS	Esophagus	oesophagus
23	chr6:26122800-26127200	Active TSS	Fetal Muscle Trunk	muscle
24	chr6:26122800-26127200	Active TSS	Left Ventricle	heart
25	chr6:26122800-26127200	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chr6:26122800-26127200	Active TSS	Small Intestine	intestine
27	chr6:26122800-26127600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:26122800-26127600	Active TSS	Colonic Mucosa	Colon
29	chr6:26122800-26127600	Active TSS	Right Ventricle	heart
30	chr6:26122800-26128600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:26123000-26125000	Active TSS	Fetal Heart	heart
32	chr6:26123000-26126000	Active TSS	HUVEC	blood vessel
33	chr6:26123000-26126200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr6:26123000-26126600	Active TSS	Primary T cells from cord blood	blood
35	chr6:26123000-26126600	Active TSS	Fetal Stomach	stomach
36	chr6:26123000-26126800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:26123000-26126800	Active TSS	Fetal Muscle Leg	muscle
38	chr6:26123000-26126800	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:26123000-26126800	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr6:26123000-26126800	Active TSS	Stomach Smooth Muscle	stomach
41	chr6:26123000-26127000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:26123000-26127000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:26123000-26127000	Active TSS	Brain Anterior Caudate	brain
44	chr6:26123000-26127000	Active TSS	Pancreas	Pancrea
45	chr6:26123000-26127000	Active TSS	Stomach Mucosa	stomach
46	chr6:26123000-26127200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:26123000-26127200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:26123000-26127200	Active TSS	Colon Smooth Muscle	Colon
49	chr6:26123000-26127200	Active TSS	GM12878-XiMat	blood
50	chr6:26123000-26127400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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