Variant report

Variant	rs2230655
Chromosome Location	chr6:26033506-26033507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:328)
CpG islands
(count:61)
Chromatin interactive
region (count:46)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:328 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr6:26033309-26033931	H1-hESC	embryonic stem cell:	n/a	n/a
2	GATA1	chr6:26033336-26034129	PBDE	blood:	n/a	chr6:26033803-26033815 chr6:26033801-26033817
3	TCF12	chr6:26033123-26034020	A549	lung:	n/a	n/a
4	TEAD4	chr6:26030925-26034594	K562	blood:	n/a	n/a
5	RCOR1	chr6:26033143-26034117	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:26032836-26034133	GM12891	blood:	n/a	n/a
7	GTF2F1	chr6:26033402-26034088	H1-hESC	embryonic stem cell:	n/a	n/a
8	E2F6	chr6:26033452-26033856	K562	blood:	n/a	n/a
9	CREB1	chr6:26033103-26034159	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:26032941-26034013	GM12878	blood:	n/a	n/a
11	TCF3	chr6:26033107-26033986	GM12878	blood:	n/a	n/a
12	CREB1	chr6:26030928-26034145	K562	blood:	n/a	chr6:26032480-26032493
13	CEBPB	chr6:26033494-26034239	A549	lung:	n/a	n/a
14	POLR2A	chr6:26032643-26034060	HL-60	blood:	n/a	n/a
15	MAFK	chr6:26031445-26034075	Hela-S3	cervix:	n/a	n/a
16	RCOR1	chr6:26033357-26034654	K562	blood:	n/a	n/a
17	MAX	chr6:26032825-26033943	ECC-1	luminal epithelium:	n/a	n/a
18	ZBTB33	chr6:26032830-26034149	A549	lung:	n/a	chr6:26033544-26033559
19	CEBPD	chr6:26029286-26034640	K562	blood:	n/a	n/a
20	PAX5	chr6:26033220-26033784	GM12878	blood:	n/a	n/a
21	CHD1	chr6:26030593-26034261	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr6:26033341-26034100	Hela-S3	cervix:	n/a	n/a
23	ELK1	chr6:26033446-26034152	GM12878	blood:	n/a	n/a
24	POLR2A	chr6:26030860-26034038	Hela-S3	cervix:	n/a	n/a
25	NFIC	chr6:26032873-26033999	ECC-1	luminal epithelium:	n/a	n/a
26	MAX	chr6:26033319-26033949	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr6:26032808-26034126	U87	brain:	n/a	n/a
28	REST	chr6:26033299-26033831	K562	blood:	n/a	n/a
29	NR2F2	chr6:26030007-26034696	K562	blood:	n/a	n/a
30	MYC	chr6:26033446-26033782	HepG2	liver:	n/a	n/a
31	MYBL2	chr6:26031451-26034257	HepG2	liver:	n/a	chr6:26031699-26031709
32	POLR2A	chr6:26032676-26034074	GM12878	blood:	n/a	n/a
33	MAX	chr6:26031618-26034056	Hela-S3	cervix:	n/a	n/a
34	ZBTB33	chr6:26032859-26034068	HepG2	liver:	n/a	chr6:26033544-26033559
35	TCF12	chr6:26032911-26034404	SK-N-SH	brain:	n/a	n/a
36	SP1	chr6:26033111-26034747	HCT-116	colon:	n/a	chr6:26033924-26033945
37	POLR2A	chr6:26033034-26033949	HepG2	liver:	n/a	n/a
38	CEBPB	chr6:26031391-26034289	GM12878	blood:	n/a	n/a
39	POLR2A	chr6:26031008-26034306	GM12878	blood:	n/a	n/a
40	PAX5	chr6:26033044-26034020	GM12878	blood:	n/a	n/a
41	POLR2A	chr6:26032813-26034035	HUVEC	blood vessel:	n/a	n/a
42	POLR2A	chr6:26025305-26034609	H1-hESC	embryonic stem cell:	n/a	n/a
43	BHLHE40	chr6:26033485-26034404	GM12878	blood:	n/a	n/a
44	RUNX3	chr6:26031395-26034651	GM12878	blood:	n/a	n/a
45	ELK1	chr6:26030965-26034021	K562	blood:	n/a	n/a
46	TRIM28	chr6:26031407-26034348	K562	blood:	n/a	n/a
47	ELK4	chr6:26033317-26033550	HEK293	kidney:	n/a	n/a
48	POLR2A	chr6:26032743-26034135	HepG2	liver:	n/a	n/a
49	YY1	chr6:26033159-26033936	GM12878	blood:	n/a	n/a
50	HEY1	chr6:26032574-26034138	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26033475-26033525	HPAEpiC	pulmonary alveolar:	n/a
2	chr6:26033475-26033525	HCF	heart:	n/a
3	chr6:26033475-26033525	GM12892	blood:	n/a
4	chr6:26033475-26033525	H1-hESC	embryonic stem cell:	embryo
5	chr6:26033475-26033525	NB4	blood:	n/a
6	chr6:26033475-26033525	PrEC	prostate:	n/a
7	chr6:26033475-26033525	HepG2	liver:	n/a
8	chr6:26033475-26033525	GM12878	blood:	n/a
9	chr6:26033475-26033525	BJ	skin:	n/a
10	chr6:26033475-26033525	Jurkat	blood:	n/a
11	chr6:26033475-26033525	GM19239	blood:	n/a
12	chr6:26033475-26033525	SAEC	small airway:	n/a
13	chr6:26033475-26033525	AG09309	skin:	n/a
14	chr6:26033475-26033525	LNCaP	prostate:	n/a
15	chr6:26033475-26033525	RPTEC	kidney:	n/a
16	chr6:26033475-26033525	AG04450	lung:	fetal
17	chr6:26033475-26033525	SK-N-MC	brain:	n/a
18	chr6:26033475-26033525	AG09319	gingival:	n/a
19	chr6:26033475-26033525	NH-A	brain:	n/a
20	chr6:26033475-26033525	NHDF-neo	bronchial:	n/a
21	chr6:26033475-26033525	HAEpiC	amniotic membrane:	n/a
22	chr6:26033475-26033525	HRE	kidney:	n/a
23	chr6:26033475-26033525	AoSMC	blood vessel:	n/a
24	chr6:26033475-26033525	HEEpiC	esophagus:	n/a
25	chr6:26033475-26033525	MCF-7	breast:	n/a
26	chr6:26033475-26033525	GM12891	blood:	n/a
27	chr6:26033475-26033525	HCT-116	colon:	n/a
28	chr6:26033475-26033525	ovcar-3	ovarian:	n/a
29	chr6:26033475-26033525	K562	blood:	n/a
30	chr6:26033475-26033525	HL-60	blood:	n/a
31	chr6:26033475-26033525	HCPEpiC	choroid plexus:	n/a
32	chr6:26033475-26033525	HCM	heart:	n/a
33	chr6:26033475-26033525	Caco-2	colon:	n/a
34	chr6:26033475-26033525	PANC-1	pancreas:	n/a
35	chr6:26033475-26033525	HRPEpiC	eye:	n/a
36	chr6:26033475-26033525	CMK	blood:	n/a
37	chr6:26033475-26033525	HIPEpiC	eye:	n/a
38	chr6:26033475-26033525	IMR90	lung:	fetal
39	chr6:26033475-26033525	SK-N-SH	brain:	n/a
40	chr6:26033475-26033525	AG10803	skin:	n/a
41	chr6:26033475-26033525	A549	lung:	n/a
42	chr6:26033475-26033525	Hela-S3	cervix:	n/a
43	chr6:26033475-26033525	GM06990	blood:	n/a
44	chr6:26033475-26033525	MCF10A-Er-Src	breast:	n/a
45	chr6:26033475-26033525	HUVEC	blood vessel:	n/a
46	chr6:26033475-26033525	HEK293	kidney:	embryo
47	chr6:26033475-26033525	PFSK-1	brain:	n/a
48	chr6:26033475-26033525	HMEC	breast:	n/a
49	chr6:26033475-26033525	U87	brain:	n/a
50	chr6:26033475-26033525	SK-N-SH_RA	brain:	n/a

(count:46 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
2	chr6:26030987..26033911-chr6:27775550..27778920,4	K562	blood:
3	chr6:26030558..26034410-chr6:27100755..27103505,3	MCF-7	breast:
4	chr6:26033327..26033948-chr6:26045432..26046107,2	NB4	blood:
5	chr6:26029311..26033760-chr6:27774369..27777821,5	MCF-7	breast:
6	chr6:26032840..26034621-chr6:27775962..27778239,2	MCF-7	breast:
7	chr6:26032281..26034912-chr6:151976877..151979649,2	MCF-7	breast:
8	chr6:26033467..26034040-chr7:100026385..100027180,3	Hela-S3	cervix:
9	chr6:26030891..26034608-chr6:26223354..26228378,6	MCF-7	breast:
10	chr22:18121298..18122062-chr6:26033016..26033929,2	Hela-S3	cervix:
11	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
12	chr6:26030782..26033765-chr6:30585161..30587515,2	MCF-7	breast:
13	chr6:26032417..26034288-chr6:27803614..27806340,2	K562	blood:
14	chr6:26033399..26033929-chr6:30711798..30712759,2	Hela-S3	cervix:
15	chr1:174968009..174969900-chr6:26032089..26033995,2	K562	blood:
16	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
17	chr6:26033420..26034983-chr6:43738377..43740879,2	MCF-7	breast:
18	chr1:11968743..11971201-chr6:26031885..26034451,2	MCF-7	breast:
19	chr6:26032382..26034370-chr6:27099704..27101484,2	MCF-7	breast:
20	chr6:26032242..26033933-chr6:27858634..27862498,4	MCF-7	breast:
21	chr6:26030302..26034233-chr6:34203696..34206879,3	K562	blood:
22	chr6:26033491..26034015-chr6:26123741..26124703,2	Hela-S3	cervix:
23	chr6:26031185..26034143-chr6:26233658..26236359,2	MCF-7	breast:
24	chr2:96874147..96874759-chr6:26033236..26033940,2	Hela-S3	cervix:
25	chr6:26033297..26035200-chr6:27833856..27836117,3	MCF-7	breast:
26	chr5:90678528..90679489-chr6:26032990..26033772,2	Hela-S3	cervix:
27	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
28	chr6:26031607..26034880-chr6:27837430..27841431,3	K562	blood:
29	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
30	chr6:26033333..26034270-chr6:26043612..26044453,2	NB4	blood:
31	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
32	chr17:34900509..34901208-chr6:26032776..26033658,2	Hela-S3	cervix:
33	chr6:26032854..26035580-chr6:26251207..26253979,3	MCF-7	breast:
34	chr6:26032363..26034089-chr6:44190189..44191999,2	K562	blood:
35	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
36	chr6:26030074..26034864-chr6:27112849..27118591,14	K562	blood:
37	chr6:26031804..26034805-chr6:26202147..26206144,5	MCF-7	breast:
38	chr6:26033393..26033930-chr6:26045556..26046130,2	Hela-S3	cervix:
39	chr17:78427771..78430081-chr6:26032225..26034059,2	MCF-7	breast:
40	chr2:192542821..192543331-chr6:26033243..26033856,2	Hela-S3	cervix:
41	chr6:26032234..26034590-chr6:26239058..26240623,2	MCF-7	breast:
42	chr6:26030021..26034897-chr6:26196138..26201230,10	MCF-7	breast:
43	chr6:26032761..26033672-chr6:26157419..26158236,2	Hela-S3	cervix:
44	chr6:26032288..26035408-chr6:26183846..26189517,7	MCF-7	breast:
45	chr6:26025629..26034912-chr6:27111740..27118591,16	K562	blood:
46	chr17:59475479..59478069-chr6:26030840..26033823,3	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H3B	TF binding region
HIST1H3B	CpG island
ENSG00000180573	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000112759	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000197459	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000198327	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000204685	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000099968	Chromatin interaction
ENSG00000197697	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000005955	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000196966	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000173559	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000260369	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000084090	Chromatin interaction
ENSG00000091831	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000198558	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10425	0.81[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes]
rs115810	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1165201	0.87[CHD][hapmap]
rs12346	1.00[ASW][hapmap];0.96[CEU][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs129129	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs1540275	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169219	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs175319	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1935235	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198810	0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap]
rs198815	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs198820	0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap]
rs198845	0.86[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs198848	0.86[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs198852	0.86[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs198853	0.87[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs199725	0.81[ASN][1000 genomes]
rs199726	0.81[ASN][1000 genomes]
rs199734	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs199736	0.81[ASN][1000 genomes]
rs199737	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs199739	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs199741	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap]
rs199750	0.86[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs199751	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199752	0.86[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs199753	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs199754	0.86[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs199755	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032447	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2051540	0.81[ASN][1000 genomes]
rs2213284	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34413295	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3752416	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs428469	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4401650	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs442601	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs531750	0.86[CHB][hapmap]
rs537581	0.86[CHB][hapmap];0.87[CHD][hapmap];0.81[LWK][hapmap]
rs599444	0.86[CHB][hapmap];0.87[CHD][hapmap];0.81[LWK][hapmap]
rs645279	0.86[CHB][hapmap]
rs6901039	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922788	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6942072	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756117	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7760848	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs807205	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs807212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs807214	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9356995	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358901	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs9379811	0.81[ASN][1000 genomes]
rs9467664	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2230655	BTN2A2	cis	lymphoblastoid	seeQTL
rs2230655	HIST1H2BD	cis	multi-tissue	Pritchard
rs2230655	HIST1H1T	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26030200-26035000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:26030400-26034800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:26030600-26034200	Active TSS	Thymus	Thymus
4	chr6:26030600-26034400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:26030600-26034400	Active TSS	A549	lung
6	chr6:26030600-26034600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:26030800-26034400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:26030800-26034600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:26030800-26034600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:26030800-26034600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:26030800-26034600	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:26030800-26035000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:26031000-26034200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:26031000-26034600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:26031000-26034600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:26031200-26034200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:26031200-26034200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:26031200-26034400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr6:26031200-26034400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:26031200-26034600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:26031200-26034600	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:26031200-26034600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:26031200-26034600	Active TSS	Dnd41	blood
24	chr6:26031200-26034800	Active TSS	Brain Germinal Matrix	brain
25	chr6:26031400-26034800	Flanking Active TSS	HUVEC	blood vessel
26	chr6:26031600-26033600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr6:26031600-26033600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr6:26031600-26033600	Flanking Active TSS	Liver	Liver
29	chr6:26031600-26033600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:26031600-26034200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:26031600-26034400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:26031600-26034400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:26031600-26034400	Active TSS	Colonic Mucosa	Colon
34	chr6:26031600-26034600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:26031600-26034600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:26031800-26033600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr6:26031800-26033600	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr6:26031800-26033600	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr6:26031800-26033800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:26031800-26034200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:26031800-26034400	Active TSS	Right Ventricle	heart
42	chr6:26031800-26034400	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr6:26031800-26034600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr6:26031800-26034600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr6:26031800-26034600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
46	chr6:26031800-26034600	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:26032000-26033800	Active TSS	Ovary	ovary
48	chr6:26032000-26034400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:26032000-26034400	Active TSS	Small Intestine	intestine
50	chr6:26032000-26034600	Active TSS	Brain Angular Gyrus	brain

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