Variant report

Variant	rs9358901
Chromosome Location	chr6:26024436-26024437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26024260..26027949-chr6:26272859..26275159,3	MCF-7	breast:
2	chr6:25785090..25786841-chr6:26022568..26024928,2	K562	blood:
3	chr6:26022756..26026190-chr6:26183005..26186257,3	MCF-7	breast:
4	chr6:25771759..25774306-chr6:26023476..26025460,3	K562	blood:
5	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
6	chr11:65274014..65276471-chr6:26022929..26025068,2	K562	blood:
7	chr6:26018945..26024445-chr6:27858774..27864727,7	MCF-7	breast:
8	chr6:26023319..26025153-chr6:27777757..27780254,2	MCF-7	breast:
9	chr6:24720577..24722152-chr6:26023120..26025797,2	MCF-7	breast:
10	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
11	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
12	chr6:26020714..26025029-chr6:27113708..27118688,4	K562	blood:
13	chr5:154207528..154209133-chr6:26023473..26025103,2	K562	blood:
14	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
15	chr6:25770868..25773858-chr6:26023960..26026372,2	K562	blood:
16	chr6:25577909..25579750-chr6:26022470..26024866,2	K562	blood:
17	chr11:62607107..62608993-chr6:26021546..26024523,3	MCF-7	breast:
18	chr6:26020982..26024830-chr6:26195555..26199073,5	MCF-7	breast:
19	chr1:45186114..45187796-chr6:26023695..26026334,2	K562	blood:
20	chr6:26023233..26029617-chr6:27098032..27102736,8	MCF-7	breast:
21	chr6:26022793..26025661-chr6:27094835..27096560,2	K562	blood:
22	chr12:125397798..125400421-chr6:26024169..26027014,2	K562	blood:
23	chr6:25815670..25817805-chr6:26023772..26026726,2	K562	blood:
24	chr6:26021018..26024759-chr6:27113066..27116254,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187475	Chromatin interaction
ENSG00000265345	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000199377	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000150991	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197697	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000263361	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10425	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs115810	0.89[CEU][hapmap]
rs12346	0.92[CEU][hapmap]
rs1540275	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1540276	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs169219	0.83[JPT][hapmap]
rs1935235	0.85[EUR][1000 genomes]
rs198853	0.92[CEU][hapmap]
rs199750	0.92[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs199751	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs199752	0.92[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs199753	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs199754	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs199755	0.82[EUR][1000 genomes]
rs2032447	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2213284	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2230655	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs3752416	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4291093	0.82[ASN][1000 genomes]
rs4401650	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6901039	0.88[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6942072	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7756117	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7760848	0.81[EUR][1000 genomes]
rs807212	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs807214	0.89[CEU][hapmap]
rs9295683	0.80[EUR][1000 genomes]
rs9356995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9379822	0.90[ASN][1000 genomes]
rs9467664	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26022200-26026600	Weak transcription	Spleen	Spleen
2	chr6:26022200-26026800	Weak transcription	Gastric	stomach
3	chr6:26022400-26025400	Weak transcription	Aorta	Aorta
4	chr6:26022400-26025400	Weak transcription	Left Ventricle	heart
5	chr6:26022400-26025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:26022400-26025600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:26022400-26025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:26022400-26025600	Weak transcription	Pancreas	Pancrea
9	chr6:26022400-26025600	Weak transcription	HSMM	muscle
10	chr6:26022400-26025600	Weak transcription	HSMMtube	muscle
11	chr6:26022400-26026200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:26022400-26026200	Weak transcription	Fetal Brain Male	brain
13	chr6:26022400-26026400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:26022400-26026600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:26022400-26026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:26022600-26024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:26022600-26024800	Weak transcription	NHLF	lung
18	chr6:26022600-26025000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:26022600-26025000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:26022600-26025000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:26022600-26025200	Weak transcription	Colonic Mucosa	Colon
22	chr6:26022600-26025200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:26022600-26025600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:26022600-26025600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:26022600-26025600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:26022600-26025600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:26022600-26025600	Weak transcription	Placenta	Placenta
28	chr6:26022600-26025600	Weak transcription	NHEK	skin
29	chr6:26022600-26025800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:26022600-26026000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:26022600-26026000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:26022600-26026200	Weak transcription	Brain Substantia Nigra	brain
33	chr6:26022600-26026200	Weak transcription	Right Atrium	heart
34	chr6:26022600-26026400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:26022800-26024600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:26022800-26024800	Weak transcription	Fetal Heart	heart
37	chr6:26022800-26025200	Weak transcription	Liver	Liver
38	chr6:26022800-26025200	Weak transcription	Stomach Mucosa	stomach
39	chr6:26022800-26025400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:26022800-26025600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:26022800-26025600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:26022800-26025600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:26022800-26025600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:26022800-26025600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:26022800-26025600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:26022800-26025600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:26022800-26025600	Weak transcription	HMEC	breast
48	chr6:26022800-26025600	Weak transcription	Osteobl	bone
49	chr6:26022800-26026000	Weak transcription	Fetal Stomach	stomach
50	chr6:26022800-26026000	Enhancers	HepG2	liver

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