Variant report

Variant	rs199754
Chromosome Location	chr6:25992309-25992310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr6:25992055-25993398	A549	lung:	n/a	chr6:25992834-25992843 chr6:25992734-25992743 chr6:25993206-25993218 chr6:25992709-25992718 chr6:25992107-25992116
2	IRF1	chr6:25991976-25993356	K562	blood:	n/a	chr6:25993205-25993219 chr6:25993179-25993188
3	PAX5	chr6:25992054-25992455	GM12878	blood:	n/a	n/a
4	ARID3A	chr6:25992046-25993269	HepG2	liver:	n/a	n/a
5	PML	chr6:25992038-25993501	K562	blood:	n/a	n/a
6	POLR2A	chr6:25991899-25993475	GM15510	blood:	n/a	n/a
7	EP300	chr6:25992186-25993150	GM12878	blood:	n/a	chr6:25992836-25992852 chr6:25992789-25992805
8	MAX	chr6:25992129-25993137	A549	lung:	n/a	n/a
9	RELA	chr6:25992251-25993271	GM19193	blood:	n/a	n/a
10	MAX	chr6:25991916-25993397	K562	blood:	n/a	n/a
11	MXI1	chr6:25991886-25993545	IMR90	lung:	n/a	n/a
12	CHD1	chr6:25992006-25993667	IMR90	lung:	n/a	chr6:25992710-25992720
13	POLR2A	chr6:25991902-25993536	HepG2	liver:	n/a	n/a
14	SPI1	chr6:25992135-25992490	GM12878	blood:	n/a	chr6:25992337-25992346 chr6:25992338-25992345
15	POLR2A	chr6:25991951-25993439	GM12892	blood:	n/a	n/a
16	RCOR1	chr6:25991951-25992405	HepG2	liver:	n/a	n/a
17	CHD1	chr6:25991969-25993527	GM12878	blood:	n/a	chr6:25992710-25992720
18	FOXM1	chr6:25992033-25993302	GM12878	blood:	n/a	n/a
19	REST	chr6:25992019-25993394	HL-60	blood:	n/a	chr6:25992801-25992814 chr6:25992150-25992163 chr6:25992833-25992846 chr6:25992713-25992723 chr6:25992292-25992305
20	TBP	chr6:25992161-25993460	GM12878	blood:	n/a	chr6:25992489-25992500
21	POLR2A	chr6:25991956-25993354	GM12892	blood:	n/a	n/a
22	GABPA	chr6:25992079-25992499	K562	blood:	n/a	n/a
23	POLR2A	chr6:25992074-25993328	HepG2	liver:	n/a	n/a
24	MYC	chr6:25992187-25992474	MCF-7	breast:	n/a	n/a
25	ZC3H11A	chr6:25992117-25993243	K562	blood:	n/a	n/a
26	POLR2A	chr6:25992000-25993418	K562	blood:	n/a	n/a
27	POLR2A	chr6:25992072-25992349	H1-hESC	embryonic stem cell:	n/a	n/a
28	FOXM1	chr6:25991853-25993269	GM12878	blood:	n/a	n/a
29	HCFC1	chr6:25991763-25993552	Hela-S3	cervix:	n/a	n/a
30	KAP1	chr6:25992271-25993334	U2OS	brain:	n/a	n/a
31	UBTF	chr6:25991559-25994127	K562	blood:	n/a	n/a
32	POLR2A	chr6:25992125-25993017	U87	brain:	n/a	n/a
33	POLR2A	chr6:25991991-25993563	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:25991990-25993511	K562	blood:	n/a	n/a
35	YY1	chr6:25992189-25993083	ECC-1	luminal epithelium:	n/a	chr6:25992734-25992743 chr6:25992838-25992852 chr6:25992849-25992860
36	RCOR1	chr6:25991937-25993492	Hela-S3	cervix:	n/a	n/a
37	ZNF143	chr6:25992080-25993301	GM12878	blood:	n/a	chr6:25992876-25992886 chr6:25992842-25992852
38	TCF3	chr6:25991982-25992507	GM12878	blood:	n/a	n/a
39	POLR2A	chr6:25992009-25993491	K562	blood:	n/a	n/a
40	RCOR1	chr6:25991957-25993938	K562	blood:	n/a	n/a
41	SPI1	chr6:25992161-25992492	K562	blood:	n/a	chr6:25992337-25992346 chr6:25992338-25992345
42	ZKSCAN1	chr6:25992222-25993442	Hela-S3	cervix:	n/a	n/a
43	YY1	chr6:25992055-25993274	GM12891	blood:	n/a	chr6:25992734-25992743 chr6:25992838-25992852 chr6:25993226-25993237 chr6:25992849-25992860
44	POLR2A	chr6:25991979-25993548	GM18951	blood:	n/a	n/a
45	POLR2A	chr6:25991921-25993366	ECC-1	luminal epithelium:	n/a	n/a
46	MAX	chr6:25992060-25993371	SK-N-SH	brain:	n/a	n/a
47	ETS1	chr6:25991959-25993190	K562	blood:	n/a	chr6:25992834-25992845
48	TEAD4	chr6:25991954-25993598	K562	blood:	n/a	n/a
49	HEY1	chr6:25992025-25993471	K562	blood:	n/a	chr6:25992784-25992799 chr6:25992813-25992828 chr6:25992824-25992839 chr6:25992836-25992851 chr6:25992131-25992140
50	POLR2A	chr6:25992125-25993032	U87	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:25992266-25992316	K562	blood:	n/a
2	chr6:25992266-25992316	AoSMC	blood vessel:	n/a
3	chr6:25992266-25992316	Hepatocyte	liver:	n/a
4	chr6:25992266-25992316	SK-N-SH	brain:	n/a
5	chr6:25992266-25992316	AG09319	gingival:	n/a
6	chr6:25992266-25992316	PrEC	prostate:	n/a
7	chr6:25992266-25992316	IMR90	lung:	fetal
8	chr6:25992266-25992316	HCPEpiC	choroid plexus:	n/a
9	chr6:25992266-25992316	MCF10A-Er-Src	breast:	n/a
10	chr6:25992266-25992316	HRCEpiC	kidney:	n/a
11	chr6:25992266-25992316	A549	lung:	n/a
12	chr6:25992266-25992316	HAEpiC	amniotic membrane:	n/a
13	chr6:25992266-25992316	U87	brain:	n/a
14	chr6:25992266-25992316	AG10803	skin:	n/a
15	chr6:25992266-25992316	HL-60	blood:	n/a
16	chr6:25992266-25992316	HMEC	breast:	n/a
17	chr6:25992266-25992316	HRPEpiC	eye:	n/a
18	chr6:25992266-25992316	HNPCEpiC	eye:	n/a
19	chr6:25992266-25992316	HCM	heart:	n/a
20	chr6:25992266-25992316	HCT-116	colon:	n/a
21	chr6:25992266-25992316	HPAEpiC	pulmonary alveolar:	n/a
22	chr6:25992266-25992316	NHBE	bronchial:	n/a
23	chr6:25992266-25992316	ovcar-3	ovarian:	n/a
24	chr6:25992266-25992316	HepG2	liver:	n/a
25	chr6:25992266-25992316	GM19239	blood:	n/a
26	chr6:25992266-25992316	HEK293	kidney:	embryo
27	chr6:25992266-25992316	BJ	skin:	n/a
28	chr6:25992266-25992316	NHDF-neo	bronchial:	n/a
29	chr6:25992266-25992316	PANC-1	pancreas:	n/a
30	chr6:25992266-25992316	AG04449	skin:	fetal
31	chr6:25992266-25992316	SAEC	small airway:	n/a
32	chr6:25992266-25992316	SK-N-SH_RA	brain:	n/a
33	chr6:25992266-25992316	Caco-2	colon:	n/a
34	chr6:25992266-25992316	ProgFib	skin:	n/a
35	chr6:25992266-25992316	HIPEpiC	eye:	n/a
36	chr6:25992266-25992316	H1-hESC	embryonic stem cell:	embryo
37	chr6:25992266-25992316	AG04450	lung:	fetal
38	chr6:25992266-25992316	BE2_C	brain:	n/a
39	chr6:25992266-25992316	T-47D	breast:	n/a
40	chr6:25992266-25992316	ECC-1	luminal epithelium:	n/a
41	chr6:25992266-25992316	PFSK-1	brain:	n/a
42	chr6:25992266-25992316	HCF	heart:	n/a
43	chr6:25992266-25992316	NH-A	brain:	n/a
44	chr6:25992266-25992316	CMK	blood:	n/a
45	chr6:25992266-25992316	RPTEC	kidney:	n/a
46	chr6:25992266-25992316	HUVEC	blood vessel:	n/a
47	chr6:25992266-25992316	AG09309	skin:	n/a
48	chr6:25992266-25992316	GM06990	blood:	n/a
49	chr6:25992266-25992316	SK-N-MC	brain:	n/a
50	chr6:25992266-25992316	MCF-7	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:25726594..25729863-chr6:25991893..25994558,4	K562	blood:
2	chr3:119813613..119814559-chr6:25992191..25992835,2	Hela-S3	cervix:
3	chr17:73150234..73151018-chr6:25992234..25993190,2	Hela-S3	cervix:
4	chr6:25936595..25939147-chr6:25991124..25992808,2	MCF-7	breast:
5	chr6:25962020..25964518-chr6:25991024..25993046,2	MCF-7	breast:
6	chr6:25990980..25994781-chr6:26019644..26023390,9	MCF-7	breast:
7	chr22:43011153..43011874-chr6:25992236..25992779,2	Hela-S3	cervix:
8	chr6:25991481..25993438-chr6:26015538..26017595,2	MCF-7	breast:
9	chr6:25992274..25993189-chr6:26020579..26021165,3	Hela-S3	cervix:
10	chr6:25867711..25870516-chr6:25992020..25994438,2	K562	blood:
11	chr6:25992154..25994849-chr6:27113422..27115157,2	K562	blood:
12	chr6:25991365..25993572-chr6:25997805..26000097,3	MCF-7	breast:
13	chr6:25991732..25993497-chr6:26025765..26028422,2	MCF-7	breast:
14	chr6:25992191..25994174-chr6:26011944..26014564,2	MCF-7	breast:
15	chr6:25725442..25728537-chr6:25991436..25993393,3	K562	blood:

Variant related genes	Relation type
ENSG00000272462	TF binding region
ENSG00000272462	CpG island
ENSG00000198366	Chromatin interaction
ENSG00000272558	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000112343	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000189159	Chromatin interaction
ENSG00000242622	Chromatin interaction
ENSG00000272810	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000224447	Chromatin interaction
ENSG00000124564	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10425	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[ASN][1000 genomes]
rs115810	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1165201	0.82[CHD][hapmap]
rs12346	0.86[ASW][hapmap];0.86[CEU][hapmap];0.92[CHD][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap]
rs129129	1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.81[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs1540275	0.86[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs169219	0.86[CHB][hapmap];0.83[GIH][hapmap]
rs175319	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1935235	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs198810	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs198815	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs198820	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap]
rs198845	0.86[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs198848	0.86[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs198852	0.86[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap]
rs198853	0.83[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs199725	0.82[AMR][1000 genomes]
rs199726	0.82[AMR][1000 genomes]
rs199734	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs199737	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs199739	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs199741	0.84[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs199743	0.81[AMR][1000 genomes]
rs199750	1.00[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs199751	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs199752	1.00[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs199753	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs199755	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032447	0.83[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[TSI][hapmap]
rs2051540	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2213284	0.86[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2230655	0.86[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34413295	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs428469	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs4401650	0.83[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs442601	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs531750	0.86[CHB][hapmap]
rs537581	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[LWK][hapmap]
rs599444	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[LWK][hapmap]
rs645279	0.86[CHB][hapmap]
rs6901039	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6922788	0.86[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs6942072	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7756117	0.83[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.88[ASN][1000 genomes]
rs7760848	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs807205	0.84[ASN][1000 genomes]
rs807212	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs807214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs9356995	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358901	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs9379811	0.82[AMR][1000 genomes]
rs9467664	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs199754	HIST1H2AA	cis	parietal	SCAN
rs199754	FKSG83	cis	parietal	SCAN
rs199754	HIST1H2AJ	cis	parietal	SCAN
rs199754	HIST1H4I	cis	cerebellum	SCAN
rs199754	HIST1H2BB	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25991400-25992800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:25991600-25992400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:25991600-25992400	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr6:25991600-25992400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:25991600-25992800	Flanking Active TSS	Dnd41	blood
6	chr6:25991600-25992800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:25991600-25993600	Active TSS	Liver	Liver
8	chr6:25991600-25994000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:25991800-25992600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr6:25991800-25992600	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:25991800-25993600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:25991800-25993800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr6:25991800-25994000	Active TSS	Hela-S3	cervix
14	chr6:25991800-25994200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:25991800-25994200	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:25992000-25992400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:25992000-25992400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr6:25992000-25992400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:25992000-25992400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:25992000-25992400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:25992000-25992400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:25992000-25992400	Flanking Active TSS	Fetal Brain Male	brain
23	chr6:25992000-25992400	Flanking Active TSS	Fetal Muscle Trunk	muscle
24	chr6:25992000-25992400	Flanking Active TSS	Pancreas	Pancrea
25	chr6:25992000-25992400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr6:25992000-25992400	Active TSS	Rectal Smooth Muscle	rectum
27	chr6:25992000-25992400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr6:25992000-25992400	Flanking Active TSS	GM12878-XiMat	blood
29	chr6:25992000-25992600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:25992000-25992600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr6:25992000-25992600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:25992000-25992600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:25992000-25992600	Flanking Active TSS	HSMMtube	muscle
34	chr6:25992000-25992600	Flanking Active TSS	NHDF-Ad	bronchial
35	chr6:25992000-25992800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:25992000-25992800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr6:25992000-25992800	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr6:25992000-25992800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:25992000-25992800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:25992000-25992800	Flanking Active TSS	Fetal Thymus	thymus
41	chr6:25992000-25992800	Flanking Active TSS	HMEC	breast
42	chr6:25992000-25992800	Flanking Active TSS	HUVEC	blood vessel
43	chr6:25992000-25993000	Active TSS	Thymus	Thymus
44	chr6:25992000-25993200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:25992000-25993200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:25992000-25993400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:25992000-25993400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:25992000-25993400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:25992000-25993400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:25992000-25993400	Active TSS	Primary T helper naive cells from peripheral blood	blood

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