Variant report

Variant	rs198853
Chromosome Location	chr6:26104096-26104097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:617)
CpG islands
(count:122)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:617 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:26103424-26104403	HUVEC	blood vessel:	n/a	chr6:26104005-26104014 chr6:26103578-26103588 chr6:26103580-26103587 chr6:26103579-26103587 chr6:26103579-26103588
2	REST	chr6:26103962-26104508	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr6:26103998-26105005	GM12878	blood:	n/a	n/a
4	PML	chr6:26103929-26104901	MCF-7	breast:	n/a	n/a
5	YY1	chr6:26103834-26104655	SK-N-SH_RA	brain:	n/a	n/a
6	CEBPD	chr6:26103764-26105313	K562	blood:	n/a	n/a
7	NANOG	chr6:26103999-26104362	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr6:26103939-26104928	Hela-S3	cervix:	n/a	n/a
9	TAL1	chr6:26104010-26105676	K562	blood:	n/a	n/a
10	POLR2A	chr6:26103814-26104965	Hela-S3	cervix:	n/a	n/a
11	SIN3AK20	chr6:26103685-26105020	HCT-116	colon:	n/a	n/a
12	STAT3	chr6:26103533-26104320	MCF10A-Er-Src	breast:	n/a	chr6:26103889-26103896 chr6:26103578-26103587 chr6:26103579-26103588 chr6:26103971-26103983
13	RELA	chr6:26103940-26104815	GM18951	blood:	n/a	n/a
14	WRNIP1	chr6:26103941-26104840	GM12878	blood:	n/a	n/a
15	MTA3	chr6:26103868-26104919	GM12878	blood:	n/a	n/a
16	ELF1	chr6:26103846-26104651	MCF-7	breast:	n/a	chr6:26104312-26104325
17	STAT3	chr6:26103487-26104535	Hela-S3	cervix:	n/a	chr6:26103889-26103896 chr6:26103578-26103587 chr6:26103579-26103588 chr6:26103971-26103983
18	RELA	chr6:26103831-26104814	GM10847	blood:	n/a	n/a
19	CEBPB	chr6:26103902-26104479	A549	lung:	n/a	n/a
20	NFIC	chr6:26103825-26105046	SK-N-SH	brain:	n/a	n/a
21	ETS1	chr6:26103903-26105369	K562	blood:	n/a	n/a
22	CREB1	chr6:26103764-26104513	H1-hESC	embryonic stem cell:	n/a	n/a
23	RCOR1	chr6:26103985-26104813	HepG2	liver:	n/a	n/a
24	RELA	chr6:26103912-26104874	GM19099	blood:	n/a	n/a
25	FOXA1	chr6:26103805-26104385	HepG2	liver:	n/a	n/a
26	MTA3	chr6:26103764-26105088	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:26104064-26104490	A549	lung:	n/a	n/a
28	TRIM28	chr6:26103826-26104461	K562	blood:	n/a	n/a
29	ELF1	chr6:26103957-26104610	K562	blood:	n/a	chr6:26104312-26104325
30	BCL3	chr6:26103878-26104932	K562	blood:	n/a	n/a
31	POLR2A	chr6:26103793-26105147	K562	blood:	n/a	n/a
32	FOS	chr6:26103407-26104403	MCF10A-Er-Src	breast:	n/a	chr6:26104005-26104014 chr6:26103578-26103588 chr6:26103577-26103588 chr6:26103580-26103587 chr6:26103579-26103587 chr6:26103579-26103588
33	POLR2A	chr6:26103691-26105363	HL-60	blood:	n/a	n/a
34	TAF1	chr6:26104024-26104326	GM12891	blood:	n/a	n/a
35	CBX3	chr6:26103818-26104740	K562	blood:	n/a	n/a
36	JUND	chr6:26103976-26104560	H1-hESC	embryonic stem cell:	n/a	chr6:26104005-26104014
37	MAFK	chr6:26103925-26104389	HepG2	liver:	n/a	n/a
38	RUNX3	chr6:26103790-26104883	GM12878	blood:	n/a	n/a
39	CREB1	chr6:26103777-26104833	H1-hESC	embryonic stem cell:	n/a	n/a
40	MAX	chr6:26103807-26104784	Hela-S3	cervix:	n/a	n/a
41	RAD21	chr6:26103950-26104638	IMR90	lung:	n/a	n/a
42	YY1	chr6:26104055-26104343	K562	blood:	n/a	n/a
43	BCL3	chr6:26103895-26104819	A549	lung:	n/a	n/a
44	MAX	chr6:26103879-26104689	GM12878	blood:	n/a	n/a
45	EP300	chr6:26103769-26104690	HepG2	liver:	n/a	n/a
46	SP4	chr6:26103761-26104727	H1-hESC	embryonic stem cell:	n/a	n/a
47	ATF2	chr6:26103840-26105317	H1-hESC	embryonic stem cell:	n/a	n/a
48	EP300	chr6:26103909-26104618	K562	blood:	n/a	n/a
49	POLR2A	chr6:26103942-26105054	GM12891	blood:	n/a	n/a
50	SIN3AK20	chr6:26103844-26104759	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26104089-26104139	AG09319	gingival:	n/a
2	chr6:26104089-26104139	LNCaP	prostate:	n/a
3	chr6:26104087-26104137	HCM	heart:	n/a
4	chr6:26104087-26104137	T-47D	breast:	n/a
5	chr6:26104089-26104139	HEEpiC	esophagus:	n/a
6	chr6:26104089-26104139	Caco-2	colon:	n/a
7	chr6:26104087-26104137	AG09309	skin:	n/a
8	chr6:26104087-26104137	BJ	skin:	n/a
9	chr6:26104087-26104137	GM19239	blood:	n/a
10	chr6:26104089-26104139	NHDF-neo	bronchial:	n/a
11	chr6:26104087-26104137	HUVEC	blood vessel:	n/a
12	chr6:26104087-26104137	HRE	kidney:	n/a
13	chr6:26104087-26104137	HCF	heart:	n/a
14	chr6:26104087-26104137	NB4	blood:	n/a
15	chr6:26104087-26104137	AoSMC	blood vessel:	n/a
16	chr6:26104087-26104137	AG09319	gingival:	n/a
17	chr6:26104087-26104137	PANC-1	pancreas:	n/a
18	chr6:26104087-26104137	Jurkat	blood:	n/a
19	chr6:26104089-26104139	SKMC	muscle:	n/a
20	chr6:26104089-26104139	NT2-D1	testis:	n/a
21	chr6:26104089-26104139	BJ	skin:	n/a
22	chr6:26104089-26104139	SK-N-SH_RA	brain:	n/a
23	chr6:26104087-26104137	HCT-116	colon:	n/a
24	chr6:26104089-26104139	HRE	kidney:	n/a
25	chr6:26104089-26104139	HUVEC	blood vessel:	n/a
26	chr6:26104089-26104139	MCF10A-Er-Src	breast:	n/a
27	chr6:26104089-26104139	HCF	heart:	n/a
28	chr6:26104087-26104137	ProgFib	skin:	n/a
29	chr6:26104087-26104137	Hepatocyte	liver:	n/a
30	chr6:26104087-26104137	A549	lung:	n/a
31	chr6:26104087-26104137	HNPCEpiC	eye:	n/a
32	chr6:26104089-26104139	AG09309	skin:	n/a
33	chr6:26104087-26104137	AG04449	skin:	fetal
34	chr6:26104089-26104139	GM12891	blood:	n/a
35	chr6:26104087-26104137	MCF-7	breast:	n/a
36	chr6:26104087-26104137	HMEC	breast:	n/a
37	chr6:26104089-26104139	AG10803	skin:	n/a
38	chr6:26104087-26104137	BE2_C	brain:	n/a
39	chr6:26104089-26104139	MCF-7	breast:	n/a
40	chr6:26104087-26104137	HEK293	kidney:	embryo
41	chr6:26104087-26104137	Hela-S3	cervix:	n/a
42	chr6:26104087-26104137	Caco-2	colon:	n/a
43	chr6:26104089-26104139	GM19239	blood:	n/a
44	chr6:26104087-26104137	PFSK-1	brain:	n/a
45	chr6:26104087-26104137	ovcar-3	ovarian:	n/a
46	chr6:26104089-26104139	Jurkat	blood:	n/a
47	chr6:26104087-26104137	HAEpiC	amniotic membrane:	n/a
48	chr6:26104087-26104137	PrEC	prostate:	n/a
49	chr6:26104089-26104139	GM12878	blood:	n/a
50	chr6:26104087-26104137	NT2-D1	testis:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26102660..26104205-chr6:27804912..27807560,2	MCF-7	breast:
2	chr17:79826314..79826980-chr6:26103771..26104517,2	HCT-116	colon:
3	chr19:33793219..33794086-chr6:26103698..26104271,2	NB4	blood:
4	chr10:74033615..74034131-chr6:26103848..26104489,2	Hela-S3	cervix:
5	chr6:26101409..26106036-chr6:27098701..27102040,8	K562	blood:
6	chr4:90032248..90033146-chr6:26103791..26104616,2	Hela-S3	cervix:
7	chr19:10654465..10655067-chr6:26103887..26104848,2	NB4	blood:
8	chr6:26103772..26104616-chr8:134308982..134309567,2	Hela-S3	cervix:
9	chr6:26103055..26105911-chr6:27113369..27117045,6	K562	blood:
10	chr6:26103926..26104502-chr6:150038578..150039176,2	Hela-S3	cervix:
11	chr17:56708534..56710943-chr6:26103089..26104740,2	MCF-7	breast:
12	chr14:20937170..20938090-chr6:26103896..26104570,2	Hela-S3	cervix:
13	chr3:187871474..187872032-chr6:26103716..26104440,2	Hela-S3	cervix:
14	chr15:43622697..43623448-chr6:26103718..26104631,2	Hela-S3	cervix:
15	chr6:26052762..26068184-chr6:26093226..26113078,68	MCF-7	breast:
16	chr6:26042662..26045122-chr6:26102656..26104697,2	MCF-7	breast:
17	chr6:26101462..26104336-chr6:26520946..26522887,2	MCF-7	breast:
18	chr6:26026694..26027650-chr6:26103682..26104243,2	NB4	blood:
19	chr12:57039254..57039982-chr6:26103866..26104750,2	Hela-S3	cervix:
20	chr15:71407014..71408733-chr6:26102615..26104813,2	MCF-7	breast:
21	chr6:26103941..26105937-chr6:27113043..27115556,2	MCF-7	breast:
22	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
23	chr6:26104003..26105520-chr6:27859032..27861107,2	MCF-7	breast:
24	chr6:26104016..26104860-chr7:100026720..100027413,2	HCT-116	colon:
25	chr22:43011043..43011628-chr6:26103546..26104483,2	Hela-S3	cervix:
26	chr12:49524716..49525586-chr6:26103705..26104546,2	Hela-S3	cervix:
27	chr20:57554671..57557045-chr6:26103566..26105565,2	MCF-7	breast:
28	chr15:89877763..89878513-chr6:26104043..26104709,2	NB4	blood:
29	chr18:33709608..33710404-chr6:26103817..26104463,2	NB4	blood:
30	chr6:26103870..26104690-chr9:128003459..128004003,2	Hela-S3	cervix:
31	chr2:190648081..190648767-chr6:26103962..26104723,2	Hela-S3	cervix:
32	chr12:46662594..46663567-chr6:26103738..26104255,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H4C	TF binding region
HIST1H4C	CpG island
ENSG00000137259	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000230259	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000271359	Chromatin interaction
ENSG00000044574	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000239705	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000134759	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000111371	Chromatin interaction
ENSG00000128699	Chromatin interaction
ENSG00000261441	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000101158	Chromatin interaction
ENSG00000110955	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000130734	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000245848	Chromatin interaction
ENSG00000140521	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000267296	Chromatin interaction
ENSG00000225362	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000178863	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000145012	Chromatin interaction
ENSG00000168803	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000198805	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000270959	Chromatin interaction
ENSG00000104419	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000141522	Chromatin interaction
ENSG00000138640	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10425	0.96[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap]
rs1068554	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1090947	0.84[EUR][1000 genomes]
rs115810	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12346	0.87[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs129129	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs1540275	0.87[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1540276	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs169219	0.84[CHD][hapmap]
rs1935235	0.89[EUR][1000 genomes]
rs198801	0.89[ASN][1000 genomes]
rs198810	0.89[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs198815	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs198818	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs198820	0.89[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs198834	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs198845	0.89[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs198847	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs198848	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198849	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198850	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198852	0.87[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs199737	0.86[CHB][hapmap]
rs199739	0.86[CHB][hapmap]
rs199741	0.86[CHB][hapmap];0.87[CHD][hapmap];0.81[MEX][hapmap]
rs199750	0.91[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs199751	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs199752	0.91[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs199753	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs199754	0.83[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs2032447	0.92[CEU][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.80[TSI][hapmap]
rs2213284	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs2230655	0.87[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4401650	0.92[CEU][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap]
rs442601	0.86[CHB][hapmap]
rs6901039	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap]
rs6922788	0.87[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap]
rs7756117	0.92[CEU][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap]
rs807205	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs807212	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs807214	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs9358901	0.92[CEU][hapmap]
rs9467664	0.96[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
8	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
9	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
10	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
11	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
12	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
13	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
14	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
15	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
16	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
17	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
18	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs198853	HFE	cis	Liver	GTEx
rs198853	HIST1H2BB	cis	parietal	SCAN
rs198853	HIST1H4I	cis	cerebellum	SCAN
rs198853	HFE	cis	multi-tissue	Pritchard
rs198853	HIST1H2AJ	cis	parietal	SCAN
rs198853	BTN2A2	cis	lymphoblastoid	seeQTL
rs198853	HIST1H2AA	cis	parietal	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26090000-26104200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:26093200-26104200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:26099600-26104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:26103200-26104800	Flanking Active TSS	NHEK	skin
5	chr6:26103200-26105000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:26103400-26104600	Active TSS	Thymus	Thymus
7	chr6:26103400-26104800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:26103400-26104800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:26103400-26104800	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr6:26103400-26104800	Flanking Active TSS	HUVEC	blood vessel
11	chr6:26103400-26104800	Active TSS	NHDF-Ad	bronchial
12	chr6:26103400-26105000	Active TSS	NHLF	lung
13	chr6:26103400-26105200	Active TSS	A549	lung
14	chr6:26103600-26104200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:26103600-26104200	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:26103600-26104200	Active TSS	HepG2	liver
17	chr6:26103600-26104200	Active TSS	K562	blood
18	chr6:26103600-26104400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:26103600-26104400	Active TSS	Fetal Muscle Leg	muscle
20	chr6:26103600-26104400	Active TSS	Placenta	Placenta
21	chr6:26103600-26104400	Active TSS	HSMMtube	muscle
22	chr6:26103600-26104600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:26103600-26104600	Active TSS	Brain Cingulate Gyrus	brain
24	chr6:26103600-26104600	Active TSS	Brain Hippocampus Middle	brain
25	chr6:26103600-26104600	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr6:26103600-26104600	Active TSS	Colon Smooth Muscle	Colon
27	chr6:26103600-26104600	Active TSS	Right Ventricle	heart
28	chr6:26103600-26104800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:26103600-26104800	Active TSS	Brain Anterior Caudate	brain
30	chr6:26103600-26104800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:26103600-26104800	Active TSS	Fetal Brain Male	brain
32	chr6:26103600-26104800	Active TSS	Psoas Muscle	Psoas
33	chr6:26103600-26104800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr6:26103600-26105000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:26103600-26105000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:26103600-26105000	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:26103600-26105000	Active TSS	Fetal Brain Female	brain
38	chr6:26103600-26105000	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:26103600-26105000	Active TSS	Stomach Smooth Muscle	stomach
40	chr6:26103600-26105000	Active TSS	Hela-S3	cervix
41	chr6:26103600-26105200	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:26103600-26105200	Active TSS	Colonic Mucosa	Colon
43	chr6:26103800-26104200	Active TSS	Primary T cells fromperipheralblood	blood
44	chr6:26103800-26104200	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr6:26103800-26104400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:26103800-26104400	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr6:26103800-26104400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr6:26103800-26104400	Active TSS	Fetal Stomach	stomach
49	chr6:26103800-26104400	Active TSS	Fetal Thymus	thymus
50	chr6:26103800-26104400	Active TSS	Monocytes-CD14+_RO01746	blood

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