Variant report

Variant	rs2032447
Chromosome Location	chr6:26044369-26044370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:206)
CpG islands
(count:61)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:206 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr6:26043866-26044490	Hela-S3	cervix:	n/a	n/a
2	SIN3AK20	chr6:26043359-26044766	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr6:26043180-26046720	GM12892	blood:	n/a	n/a
4	NFIC	chr6:26043271-26046700	GM12878	blood:	n/a	n/a
5	CTCF	chr6:26044320-26044470	SK-N-SH_RA	brain:	n/a	n/a
6	MAZ	chr6:26044203-26044560	Hela-S3	cervix:	n/a	n/a
7	MXI1	chr6:26043247-26046992	IMR90	lung:	n/a	n/a
8	ELF1	chr6:26044044-26044863	HepG2	liver:	n/a	n/a
9	EBF1	chr6:26043839-26044374	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:26043122-26046798	SK-N-SH	brain:	n/a	n/a
11	POLR2A	chr6:26043135-26046646	HUVEC	blood vessel:	n/a	n/a
12	KAT2A	chr6:26043363-26045079	GM12878	blood:	n/a	n/a
13	TBP	chr6:26043748-26044369	HepG2	liver:	n/a	chr6:26044205-26044216
14	SP1	chr6:26043558-26044541	A549	lung:	n/a	chr6:26044040-26044051 chr6:26044000-26044021 chr6:26044041-26044051
15	POLR2A	chr6:26043340-26044903	GM12878	blood:	n/a	n/a
16	CREB1	chr6:26043748-26044811	GM12878	blood:	n/a	n/a
17	PAX5	chr6:26044055-26044879	GM12878	blood:	n/a	n/a
18	POU2F2	chr6:26043449-26044901	GM12891	blood:	n/a	chr6:26044053-26044061 chr6:26044046-26044067 chr6:26044053-26044062 chr6:26044052-26044064 chr6:26044048-26044066 chr6:26044053-26044063 chr6:26044051-26044062 chr6:26044052-26044062 chr6:26044054-26044061 chr6:26044053-26044063 chr6:26044050-26044065
19	POLR2A	chr6:26043226-26046775	U87	brain:	n/a	n/a
20	PAX5	chr6:26044307-26044538	GM12878	blood:	n/a	n/a
21	POLR2A	chr6:26043081-26046720	GM12892	blood:	n/a	n/a
22	POLR2A	chr6:26043204-26046824	GM12878	blood:	n/a	n/a
23	RELA	chr6:26043355-26044861	GM19099	blood:	n/a	n/a
24	POLR2A	chr6:26043051-26046692	U87	brain:	n/a	n/a
25	NFYB	chr6:26043896-26044430	GM12878	blood:	n/a	chr6:26044105-26044120 chr6:26044008-26044022
26	POLR2A	chr6:26044091-26045061	MCF-7	breast:	n/a	n/a
27	ZKSCAN1	chr6:26043818-26044823	Hela-S3	cervix:	n/a	n/a
28	MAFK	chr6:26043312-26044593	HepG2	liver:	n/a	n/a
29	POLR2A	chr6:26043589-26044966	NB4	blood:	n/a	n/a
30	PML	chr6:26043272-26044743	GM12878	blood:	n/a	n/a
31	MYC	chr6:26043804-26044531	NB4	blood:	n/a	n/a
32	MBD4	chr6:26043794-26044888	HepG2	liver:	n/a	n/a
33	POLR2A	chr6:26043391-26044885	GM12878	blood:	n/a	n/a
34	ZNF143	chr6:26043976-26044681	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:26044356-26044534	A549	lung:	n/a	n/a
36	POLR2A	chr6:26043179-26045015	HepG2	liver:	n/a	n/a
37	GATA3	chr6:26043922-26044720	A549	lung:	n/a	n/a
38	POLR2A	chr6:26043191-26046694	HUVEC	blood vessel:	n/a	n/a
39	POLR2A	chr6:26044338-26044564	A549	lung:	n/a	n/a
40	POLR2A	chr6:26043157-26046775	U87	brain:	n/a	n/a
41	YY1	chr6:26044055-26044433	GM12891	blood:	n/a	n/a
42	TAF1	chr6:26044078-26044427	SK-N-SH	brain:	n/a	n/a
43	MYBL2	chr6:26043120-26046769	HepG2	liver:	n/a	n/a
44	ZEB1	chr6:26043228-26046771	HepG2	liver:	n/a	chr6:26043391-26043399
45	ATF2	chr6:26043497-26044687	GM12878	blood:	n/a	n/a
46	SP1	chr6:26043548-26044401	GM12878	blood:	n/a	chr6:26044040-26044051 chr6:26044000-26044021 chr6:26044041-26044051
47	SIN3AK20	chr6:26044353-26044922	HepG2	liver:	n/a	n/a
48	POU2F2	chr6:26043408-26044582	GM12891	blood:	n/a	chr6:26044053-26044061 chr6:26044046-26044067 chr6:26044053-26044062 chr6:26044052-26044064 chr6:26044048-26044066 chr6:26044053-26044063 chr6:26044051-26044062 chr6:26044052-26044062 chr6:26044054-26044061 chr6:26044053-26044063 chr6:26044050-26044065
49	MAX	chr6:26044174-26044903	HepG2	liver:	n/a	n/a
50	STAT3	chr6:26044234-26044730	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26044338-26044388	NB4	blood:	n/a
2	chr6:26044338-26044388	HRCEpiC	kidney:	n/a
3	chr6:26044338-26044388	AG09309	skin:	n/a
4	chr6:26044338-26044388	Caco-2	colon:	n/a
5	chr6:26044338-26044388	BE2_C	brain:	n/a
6	chr6:26044338-26044388	CMK	blood:	n/a
7	chr6:26044338-26044388	SK-N-SH	brain:	n/a
8	chr6:26044338-26044388	PrEC	prostate:	n/a
9	chr6:26044338-26044388	SAEC	small airway:	n/a
10	chr6:26044338-26044388	Hepatocyte	liver:	n/a
11	chr6:26044338-26044388	HNPCEpiC	eye:	n/a
12	chr6:26044338-26044388	HRE	kidney:	n/a
13	chr6:26044338-26044388	GM19239	blood:	n/a
14	chr6:26044338-26044388	HCF	heart:	n/a
15	chr6:26044338-26044388	HCPEpiC	choroid plexus:	n/a
16	chr6:26044338-26044388	MCF10A-Er-Src	breast:	n/a
17	chr6:26044338-26044388	A549	lung:	n/a
18	chr6:26044338-26044388	HCT-116	colon:	n/a
19	chr6:26044338-26044388	SK-N-SH_RA	brain:	n/a
20	chr6:26044338-26044388	RPTEC	kidney:	n/a
21	chr6:26044338-26044388	HL-60	blood:	n/a
22	chr6:26044338-26044388	GM12891	blood:	n/a
23	chr6:26044338-26044388	HIPEpiC	eye:	n/a
24	chr6:26044338-26044388	NH-A	brain:	n/a
25	chr6:26044338-26044388	PFSK-1	brain:	n/a
26	chr6:26044338-26044388	GM12892	blood:	n/a
27	chr6:26044338-26044388	HRPEpiC	eye:	n/a
28	chr6:26044338-26044388	IMR90	lung:	fetal
29	chr6:26044338-26044388	H1-hESC	embryonic stem cell:	embryo
30	chr6:26044338-26044388	HEEpiC	esophagus:	n/a
31	chr6:26044338-26044388	AoSMC	blood vessel:	n/a
32	chr6:26044338-26044388	HEK293	kidney:	embryo
33	chr6:26044338-26044388	MCF-7	breast:	n/a
34	chr6:26044338-26044388	PANC-1	pancreas:	n/a
35	chr6:26044338-26044388	LNCaP	prostate:	n/a
36	chr6:26044338-26044388	HepG2	liver:	n/a
37	chr6:26044338-26044388	NHBE	bronchial:	n/a
38	chr6:26044338-26044388	HCM	heart:	n/a
39	chr6:26044338-26044388	HUVEC	blood vessel:	n/a
40	chr6:26044338-26044388	AG04450	lung:	fetal
41	chr6:26044338-26044388	SK-N-MC	brain:	n/a
42	chr6:26044338-26044388	ECC-1	luminal epithelium:	n/a
43	chr6:26044338-26044388	BJ	skin:	n/a
44	chr6:26044338-26044388	GM12878	blood:	n/a
45	chr6:26044338-26044388	ProgFib	skin:	n/a
46	chr6:26044338-26044388	AG09319	gingival:	n/a
47	chr6:26044338-26044388	NT2-D1	testis:	n/a
48	chr6:26044338-26044388	HAEpiC	amniotic membrane:	n/a
49	chr6:26044338-26044388	AG04449	skin:	fetal
50	chr6:26044338-26044388	Jurkat	blood:	n/a

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:43976564..43977068-chr6:26044154..26044674,2	Hela-S3	cervix:
2	chr11:68038830..68039554-chr6:26043574..26044468,2	Hela-S3	cervix:
3	chr6:26043139..26044932-chr6:27781664..27783621,2	MCF-7	breast:
4	chr6:26044090..26046416-chr6:26198004..26201095,3	MCF-7	breast:
5	chr6:26044265..26046503-chr6:27834017..27836277,2	MCF-7	breast:
6	chr6:26033333..26034270-chr6:26043612..26044453,2	NB4	blood:
7	chr6:26044049..26046588-chr6:26248373..26251129,2	MCF-7	breast:
8	chr2:234762991..234763952-chr6:26043968..26044562,2	Hela-S3	cervix:
9	chr15:65903662..65904236-chr6:26043877..26044663,2	Hela-S3	cervix:
10	chr6:26041051..26050922-chr6:26154916..26161227,19	MCF-7	breast:
11	chr6:26043696..26045642-chr8:144951528..144954310,2	MCF-7	breast:
12	chr12:6798079..6799041-chr6:26043881..26044486,2	Hela-S3	cervix:
13	chr6:26044121..26047112-chr6:27113025..27116157,4	MCF-7	breast:
14	chr6:26043872..26047495-chr6:26122651..26127553,11	MCF-7	breast:
15	chr6:26042662..26045122-chr6:26102656..26104697,2	MCF-7	breast:
16	chr21:34914803..34915605-chr6:26043838..26044550,2	Hela-S3	cervix:
17	chr6:26043570..26047536-chr6:26215421..26218540,6	MCF-7	breast:
18	chr6:26043799..26044570-chr6:26157902..26158633,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H3C	TF binding region
HIST1H2BB	TF binding region
HIST1H3C	CpG island
HIST1H2BB	CpG island
ENSG00000074621	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000123485	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000159131	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000124145	Chromatin interaction
ENSG00000171067	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000227184	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000159140	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000126746	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000137259	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10425	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1090947	0.82[ASN][1000 genomes]
rs115810	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs12346	0.92[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap]
rs129129	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs1540275	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs1540276	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs169219	0.83[JPT][hapmap]
rs1935235	0.88[EUR][1000 genomes]
rs198810	0.80[CHD][hapmap];0.84[GIH][hapmap]
rs198820	0.80[CHD][hapmap];0.84[GIH][hapmap]
rs198845	0.88[CHD][hapmap];0.84[GIH][hapmap]
rs198848	0.87[CHD][hapmap];0.84[GIH][hapmap]
rs198852	0.88[CHD][hapmap];0.84[GIH][hapmap]
rs198853	0.92[CEU][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.80[TSI][hapmap]
rs199737	0.86[CHB][hapmap]
rs199739	0.86[CHB][hapmap]
rs199741	0.86[CHB][hapmap]
rs199750	0.92[CEU][hapmap];0.92[CHD][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs199751	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs199752	0.92[CEU][hapmap];0.92[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs199753	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs199754	0.83[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[TSI][hapmap]
rs2213284	0.96[CEU][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2230655	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34413295	0.83[EUR][1000 genomes]
rs3752416	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428469	0.86[CHB][hapmap]
rs4291093	0.88[ASN][1000 genomes]
rs4401650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs442601	0.86[CHB][hapmap]
rs6901039	0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.91[LWK][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6922788	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs6942072	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7756117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7760848	0.85[EUR][1000 genomes]
rs807212	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs807214	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs9295683	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9356995	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9358901	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9379822	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467664	0.96[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2032447	HIST1H2AJ	cis	parietal	SCAN
rs2032447	HIST1H4I	cis	cerebellum	SCAN
rs2032447	ZNF187	cis	parietal	SCAN
rs2032447	HIST1H2AA	cis	parietal	SCAN
rs2032447	HIST1H2BB	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26034400-26048200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:26034600-26044400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:26042600-26044400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:26042600-26044600	Active TSS	Fetal Brain Female	brain
5	chr6:26042600-26045800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:26043000-26046600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:26043200-26044400	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:26043200-26044400	Active TSS	Brain Germinal Matrix	brain
9	chr6:26043200-26044600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:26043200-26045200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr6:26043200-26045200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr6:26043200-26045600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr6:26043200-26045800	Active TSS	Aorta	Aorta
14	chr6:26043200-26045800	Active TSS	Brain Angular Gyrus	brain
15	chr6:26043200-26045800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:26043200-26045800	Active TSS	HSMM	muscle
17	chr6:26043200-26046000	Active TSS	Colon Smooth Muscle	Colon
18	chr6:26043200-26046200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:26043200-26046200	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr6:26043200-26046200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:26043200-26046200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:26043200-26046200	Active TSS	Brain Anterior Caudate	brain
23	chr6:26043200-26046400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:26043200-26046400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:26043200-26046600	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr6:26043200-26046600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:26043200-26046600	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr6:26043200-26046800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:26043400-26045600	Active TSS	Right Ventricle	heart
30	chr6:26043400-26045800	Active TSS	Ovary	ovary
31	chr6:26043400-26046000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr6:26043400-26046000	Active TSS	HSMMtube	muscle
33	chr6:26043400-26046200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr6:26043400-26046400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:26043400-26046600	Active TSS	H9 Cell Line	embryonic stem cell
36	chr6:26043400-26046600	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr6:26043400-26046600	Active TSS	A549	lung
38	chr6:26043400-26046600	Flanking Active TSS	NHEK	skin
39	chr6:26043600-26044400	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr6:26043600-26044400	Active TSS	Placenta Amnion	Placenta Amnion
41	chr6:26043600-26044600	Enhancers	Spleen	Spleen
42	chr6:26043600-26045600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr6:26043600-26045600	Active TSS	Psoas Muscle	Psoas
44	chr6:26043600-26045800	Active TSS	Gastric	stomach
45	chr6:26043600-26046200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:26043800-26044400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:26043800-26044400	Active TSS	Primary T cells from cord blood	blood
48	chr6:26043800-26044400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:26043800-26044400	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr6:26043800-26044400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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