Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:62969930..62974223-chr17:63117213..63122121,8	MCF-7	breast:
2	chr17:63120023..63122659-chr17:63155151..63157208,2	MCF-7	breast:
3	chr17:63119041..63121818-chr17:63180202..63183514,3	MCF-7	breast:
4	chr17:63095279..63098151-chr17:63117643..63122061,8	MCF-7	breast:
5	chr17:63050818..63055787-chr17:63117380..63122567,9	MCF-7	breast:
6	chr17:63094877..63096816-chr17:63119599..63121828,2	K562	blood:
7	chr17:62914231..62916135-chr17:63119680..63121849,2	MCF-7	breast:
8	chr17:63099337..63101171-chr17:63120378..63121953,2	MCF-7	breast:
9	chr17:63118090..63122363-chr17:63130116..63137221,12	MCF-7	breast:
10	chr17:63046304..63055748-chr17:63116888..63122496,16	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1344372	0.96[EUR][1000 genomes]
rs190961	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1968572	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs299835	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs299841	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59445569	0.81[EUR][1000 genomes]
rs59814918	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66806875	0.96[EUR][1000 genomes]
rs73343983	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73343993	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73345822	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73345825	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73345827	1.00[EUR][1000 genomes]
rs73345832	1.00[EUR][1000 genomes]
rs73345835	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73345847	0.96[EUR][1000 genomes]
rs73345861	0.96[EUR][1000 genomes]
rs73345883	0.81[EUR][1000 genomes]
rs73345887	0.81[EUR][1000 genomes]
rs73345896	0.81[EUR][1000 genomes]
rs7359499	0.81[EUR][1000 genomes]
rs986090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
2	chr17:63119800-63121800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr17:63119800-63133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:63120200-63123400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63120200-63124400	Weak transcription	Aorta	Aorta
6	chr17:63120200-63126400	Weak transcription	K562	blood

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