Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:63128770..63130452-chr17:63143108..63145459,2	MCF-7	breast:
2	chr17:63117889..63120887-chr17:63144486..63147111,3	MCF-7	breast:
3	chr17:63144698..63147268-chr17:63155004..63157714,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1344372	0.85[EUR][1000 genomes]
rs1968572	0.81[EUR][1000 genomes]
rs2017033	0.81[EUR][1000 genomes]
rs299825	0.86[EUR][1000 genomes]
rs59445569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59814918	0.81[EUR][1000 genomes]
rs66806875	0.85[EUR][1000 genomes]
rs73343983	0.81[EUR][1000 genomes]
rs73343993	0.81[EUR][1000 genomes]
rs73345822	0.81[EUR][1000 genomes]
rs73345825	0.81[EUR][1000 genomes]
rs73345827	0.81[EUR][1000 genomes]
rs73345832	0.81[EUR][1000 genomes]
rs73345835	0.81[EUR][1000 genomes]
rs73345847	0.85[EUR][1000 genomes]
rs73345861	0.85[EUR][1000 genomes]
rs73345883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359499	1.00[EUR][1000 genomes]
rs986090	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1009898	chr17:63135734-63146723	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63135800-63146800	Weak transcription	Thymus	Thymus
3	chr17:63138600-63151200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:63143000-63147000	Enhancers	GM12878-XiMat	blood
6	chr17:63143600-63146400	Weak transcription	Fetal Thymus	thymus
7	chr17:63143600-63148200	Weak transcription	Lung	lung
8	chr17:63143600-63152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:63144400-63150800	Weak transcription	Brain Anterior Caudate	brain

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