Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:63123878..63125578-chr17:63133344..63134913,2	MCF-7	breast:
2	chr17:62970667..62973276-chr17:63122835..63125688,2	K562	blood:
3	chr17:63118227..63121662-chr17:63122983..63126434,3	K562	blood:
4	chr17:63051599..63054345-chr17:63124102..63127989,4	MCF-7	breast:
5	chr17:63123841..63126817-chr17:63129572..63131096,2	K562	blood:
6	chr17:63094402..63096834-chr17:63124738..63127386,3	MCF-7	breast:
7	chr17:63117748..63120899-chr17:63122110..63128969,9	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1344372	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs190961	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1968572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017033	1.00[EUR][1000 genomes]
rs299835	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs299841	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55782645	0.92[AMR][1000 genomes]
rs59445569	0.81[EUR][1000 genomes]
rs59814918	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66806875	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343983	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73343993	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73345825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73345832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345847	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345861	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345883	0.81[EUR][1000 genomes]
rs73345887	0.81[EUR][1000 genomes]
rs73345896	0.81[EUR][1000 genomes]
rs7359499	0.81[EUR][1000 genomes]
rs986090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv527042	chr17:63123532-63128261	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
2	chr17:63119800-63133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:63120200-63126400	Weak transcription	K562	blood
4	chr17:63124000-63132600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63125000-63126000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

Quick Search: