Variant report

Variant	rs73345861
Chromosome Location	chr17:63133952-63133953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63096447..63097264-chr17:63133141..63133975,2	K562	blood:
2	chr17:63051206..63052927-chr17:63133316..63134875,2	MCF-7	breast:
3	chr17:63051597..63055036-chr17:63132407..63135692,4	MCF-7	breast:
4	chr17:63096537..63097262-chr17:63133022..63134065,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263470	Chromatin interaction
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1344372	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs190961	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1968572	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2017033	0.96[EUR][1000 genomes]
rs299835	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs299841	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59445569	0.85[EUR][1000 genomes]
rs59814918	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66806875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73343983	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343993	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73345822	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345825	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345827	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345832	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345835	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345883	0.85[EUR][1000 genomes]
rs73345887	0.85[EUR][1000 genomes]
rs73345896	0.85[EUR][1000 genomes]
rs7359499	0.85[EUR][1000 genomes]
rs986090	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63132800-63135000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr17:63133000-63134000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr17:63133000-63134000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:63133000-63134000	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr17:63133000-63134000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr17:63133000-63134000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr17:63133000-63134000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:63133000-63134000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:63133000-63134000	Active TSS	Colonic Mucosa	Colon
10	chr17:63133000-63134000	Active TSS	Fetal Kidney	kidney
11	chr17:63133000-63134000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
12	chr17:63133000-63134400	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr17:63133000-63136200	Active TSS	Brain Anterior Caudate	brain
14	chr17:63133200-63134000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:63133200-63134000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr17:63133200-63134000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr17:63133200-63134000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr17:63133200-63134000	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr17:63133200-63134000	Active TSS	Aorta	Aorta
20	chr17:63133200-63134000	Active TSS	Duodenum Mucosa	Duodenum
21	chr17:63133200-63134000	Active TSS	Fetal Brain Female	brain
22	chr17:63133200-63134000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr17:63133200-63134000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr17:63133200-63134000	Flanking Active TSS	Dnd41	blood
25	chr17:63133200-63134000	Active TSS	NHLF	lung
26	chr17:63133200-63134400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr17:63133200-63134400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr17:63133400-63134000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:63133400-63134000	Enhancers	Fetal Heart	heart
30	chr17:63133400-63134000	Bivalent/Poised TSS	HSMMtube	muscle
31	chr17:63133600-63134000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
32	chr17:63133600-63134000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr17:63133600-63134000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:63133600-63134000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr17:63133600-63134000	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr17:63133600-63134000	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr17:63133600-63134000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
38	chr17:63133600-63134000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:63133600-63134000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr17:63133600-63134000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr17:63133600-63134000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:63133600-63134000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr17:63133600-63134000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr17:63133600-63134000	Flanking Active TSS	Liver	Liver
45	chr17:63133600-63134000	Flanking Active TSS	Brain Angular Gyrus	brain
46	chr17:63133600-63134000	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr17:63133600-63134000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
48	chr17:63133600-63134000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
49	chr17:63133600-63134000	Flanking Bivalent TSS/Enh	Placenta	Placenta
50	chr17:63133600-63134000	Flanking Active TSS	Fetal Thymus	thymus

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