Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:63137944..63140739-chr17:63146348..63148204,2	MCF-7	breast:
2	chr17:63132106..63136332-chr17:63137645..63139954,3	MCF-7	breast:
3	chr17:63132119..63134997-chr17:63136945..63138623,2	K562	blood:
4	chr17:63137155..63140141-chr17:63151319..63152963,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108370	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1344372	0.85[EUR][1000 genomes]
rs1968572	0.81[EUR][1000 genomes]
rs2017033	0.81[EUR][1000 genomes]
rs299825	0.86[EUR][1000 genomes]
rs59814918	0.81[EUR][1000 genomes]
rs66806875	0.85[EUR][1000 genomes]
rs73343983	0.81[EUR][1000 genomes]
rs73343993	0.81[EUR][1000 genomes]
rs73345822	0.81[EUR][1000 genomes]
rs73345825	0.81[EUR][1000 genomes]
rs73345827	0.81[EUR][1000 genomes]
rs73345832	0.81[EUR][1000 genomes]
rs73345835	0.81[EUR][1000 genomes]
rs73345847	0.85[EUR][1000 genomes]
rs73345861	0.85[EUR][1000 genomes]
rs73345883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359499	1.00[EUR][1000 genomes]
rs986090	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1009898	chr17:63135734-63146723	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134000-63140600	Weak transcription	Right Atrium	heart
2	chr17:63134400-63140000	Weak transcription	Brain Substantia Nigra	brain
3	chr17:63134400-63143000	Weak transcription	Spleen	Spleen
4	chr17:63134400-63143200	Weak transcription	Esophagus	oesophagus
5	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:63134600-63140600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:63135600-63139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr17:63135800-63146800	Weak transcription	Thymus	Thymus
9	chr17:63136000-63142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:63136200-63140000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr17:63136200-63140200	Weak transcription	Fetal Thymus	thymus
12	chr17:63136400-63139400	Weak transcription	Brain Anterior Caudate	brain
13	chr17:63136400-63140400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:63136600-63140000	Weak transcription	Fetal Kidney	kidney
15	chr17:63136600-63140600	Weak transcription	Lung	lung
16	chr17:63137200-63139400	Enhancers	GM12878-XiMat	blood
17	chr17:63138200-63139600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:63138400-63138600	Enhancers	Pancreatic Islets	Pancreatic Islet

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