Variant report
| Variant | rs2026631 |
|---|---|
| Chromosome Location | chr10:22652217-22652218 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22645256..22647739-chr10:22650282..22653945,4 | K562 | blood: | |
| 2 | chr10:22650743..22652825-chr10:22653844..22655766,2 | K562 | blood: | |
| 3 | chr10:22629259..22630850-chr10:22651905..22653653,2 | K562 | blood: | |
| 4 | chr10:22646085..22648146-chr10:22650978..22653545,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272366 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10508643 | 0.89[LWK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs11012943 | 0.85[AFR][1000 genomes] |
| rs11012946 | 0.88[YRI][hapmap] |
| rs11012959 | 0.83[AFR][1000 genomes] |
| rs11012963 | 0.88[YRI][hapmap] |
| rs12241581 | 0.95[LWK][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs12249265 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs12257327 | 0.87[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12265907 | 0.85[AFR][1000 genomes] |
| rs7069116 | 0.85[AFR][1000 genomes] |
| rs7075793 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7084298 | 0.83[AFR][1000 genomes] |
| rs7091742 | 0.85[AFR][1000 genomes] |
| rs7092238 | 0.88[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs7904329 | 0.81[AFR][1000 genomes] |
| rs9971241 | 0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
