Variant report
| Variant | rs7904329 |
|---|---|
| Chromosome Location | chr10:22684119-22684120 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22683313..22685564-chr10:22697798..22700446,2 | K562 | blood: | |
| 2 | chr10:22629355..22631350-chr10:22682148..22684740,2 | MCF-7 | breast: | |
| 3 | chr10:22684019..22686176-chr10:22877333..22879550,2 | K562 | blood: | |
| 4 | chr10:22627115..22631323-chr10:22682450..22686909,4 | K562 | blood: | |
| 5 | chr10:22684064..22687261-chr10:22697184..22700898,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272366 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10508643 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11012884 | 1.00[AMR][1000 genomes] |
| rs11012929 | 1.00[AMR][1000 genomes] |
| rs11012930 | 1.00[AMR][1000 genomes] |
| rs11012959 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11012963 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11813663 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12249265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12253809 | 1.00[AMR][1000 genomes] |
| rs12257327 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16922161 | 1.00[AMR][1000 genomes] |
| rs2026631 | 0.81[AFR][1000 genomes] |
| rs7075793 | 0.81[AFR][1000 genomes] |
| rs7084298 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7088482 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7092238 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7094794 | 1.00[AMR][1000 genomes] |
| rs73596583 | 1.00[AMR][1000 genomes] |
| rs73596584 | 1.00[AMR][1000 genomes] |
| rs73596585 | 1.00[AMR][1000 genomes] |
| rs73596586 | 1.00[AMR][1000 genomes] |
| rs7911562 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7913154 | 1.00[AMR][1000 genomes] |
| rs7913454 | 1.00[AMR][1000 genomes] |
| rs9971241 | 0.94[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22684000-22684400 | ZNF genes & repeats | K562 | blood |
