Variant report

Variant	rs12253809
Chromosome Location	chr10:22567719-22567720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508643	1.00[AMR][1000 genomes]
rs11012884	1.00[AMR][1000 genomes]
rs11012929	1.00[AMR][1000 genomes]
rs11012930	1.00[AMR][1000 genomes]
rs11012959	1.00[AMR][1000 genomes]
rs11012963	1.00[AMR][1000 genomes]
rs11813663	1.00[AMR][1000 genomes]
rs12245656	1.00[MKK][hapmap]
rs12249265	1.00[AMR][1000 genomes]
rs12257327	1.00[AMR][1000 genomes]
rs16922161	1.00[AMR][1000 genomes]
rs7084298	1.00[AMR][1000 genomes]
rs7088482	1.00[AMR][1000 genomes]
rs7092238	1.00[AMR][1000 genomes]
rs7094794	1.00[AMR][1000 genomes]
rs73596583	1.00[AMR][1000 genomes]
rs73596584	1.00[AMR][1000 genomes]
rs73596585	1.00[AMR][1000 genomes]
rs73596586	1.00[AMR][1000 genomes]
rs7904329	1.00[AMR][1000 genomes]
rs7911562	1.00[AMR][1000 genomes]
rs7913154	1.00[AMR][1000 genomes]
rs7913454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22566600-22567800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:22566800-22567800	Active TSS	Colonic Mucosa	Colon
3	chr10:22566800-22569200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:22566800-22570000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:22566800-22570000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr10:22567400-22567800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:22567400-22567800	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr10:22567400-22568200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:22567400-22568400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:22567400-22568800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:22567400-22568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:22567400-22569600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:22567600-22569200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:22567600-22569800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:22567600-22569800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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