Variant report

Variant	rs10508643
Chromosome Location	chr10:22679177-22679178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr10:22679036-22679348	K562	blood:	n/a	n/a
2	CEBPB	chr10:22678707-22679750	K562	blood:	n/a	chr10:22679720-22679728
3	CEBPD	chr10:22678745-22679525	K562	blood:	n/a	n/a
4	CEBPB	chr10:22679079-22679380	K562	blood:	n/a	n/a
5	STAT5A	chr10:22678674-22679426	K562	blood:	n/a	n/a
6	ATF1	chr10:22678788-22679434	K562	blood:	n/a	n/a
7	TBL1XR1	chr10:22678678-22679591	K562	blood:	n/a	n/a
8	CEBPB	chr10:22679124-22679388	Hela-S3	cervix:	n/a	n/a
9	EP300	chr10:22678665-22679831	K562	blood:	n/a	n/a
10	MYC	chr10:22678716-22679481	K562	blood:	n/a	chr10:22678742-22678753
11	TEAD4	chr10:22678615-22679625	K562	blood:	n/a	n/a
12	EP300	chr10:22678761-22679219	K562	blood:	n/a	n/a
13	JUN	chr10:22678752-22679479	K562	blood:	n/a	n/a
14	SMARCA4	chr10:22678582-22679425	K562	blood:	n/a	n/a
15	NR2F2	chr10:22678590-22679378	K562	blood:	n/a	chr10:22679164-22679179
16	MYC	chr10:22678657-22679517	K562	blood:	n/a	chr10:22678742-22678753
17	POLR2A	chr10:22679075-22679437	K562	blood:	n/a	n/a
18	CEBPB	chr10:22678636-22679818	K562	blood:	n/a	chr10:22679720-22679728
19	RCOR1	chr10:22678650-22679558	K562	blood:	n/a	n/a
20	PML	chr10:22678677-22679504	K562	blood:	n/a	n/a
21	TRIM28	chr10:22678533-22679521	K562	blood:	n/a	n/a
22	NR2F2	chr10:22678659-22679459	K562	blood:	n/a	chr10:22679164-22679179
23	ARID3A	chr10:22678644-22679353	K562	blood:	n/a	n/a
24	MAZ	chr10:22678763-22679540	K562	blood:	n/a	n/a
25	TEAD4	chr10:22678657-22679443	K562	blood:	n/a	n/a
26	POLR2A	chr10:22678743-22679472	K562	blood:	n/a	n/a
27	GATA1	chr10:22678742-22679515	PBDE	blood:	n/a	chr10:22678946-22678962 chr10:22679101-22679111 chr10:22678949-22678959 chr10:22678950-22678959
28	MAFK	chr10:22678832-22679348	K562	blood:	n/a	n/a
29	ZNF384	chr10:22678764-22679294	K562	blood:	n/a	n/a
30	TAL1	chr10:22678645-22679215	K562	blood:	n/a	n/a
31	JUND	chr10:22678729-22679604	K562	blood:	n/a	n/a
32	MAX	chr10:22678631-22679698	K562	blood:	n/a	chr10:22678742-22678753
33	PML	chr10:22678701-22679469	K562	blood:	n/a	n/a
34	CUX1	chr10:22678520-22679491	K562	blood:	n/a	n/a
35	EP300	chr10:22679154-22679191	GM12878	blood:	n/a	n/a
36	ZMIZ1	chr10:22678766-22679534	K562	blood:	n/a	n/a
37	BHLHE40	chr10:22678737-22679445	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22625398..22631647-chr10:22676300..22682265,8	K562	blood:
2	chr10:22678662..22680456-chr10:22690935..22692529,2	K562	blood:
3	chr10:22677540..22679205-chr10:22717546..22719752,2	K562	blood:
4	chr10:22607781..22611461-chr10:22678220..22681015,4	K562	blood:
5	chr10:22676854..22679698-chr10:22689604..22691174,3	K562	blood:
6	chr10:22662789..22665601-chr10:22678591..22680549,3	K562	blood:
7	chr10:22664101..22666356-chr10:22678595..22680288,2	K562	blood:
8	chr10:22608333..22611559-chr10:22678806..22682635,4	K562	blood:
9	chr10:22611886..22615757-chr10:22677839..22683321,7	K562	blood:

No data

Variant related genes	Relation type
SPAG6	TF binding region
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11012884	1.00[AMR][1000 genomes]
rs11012929	1.00[AMR][1000 genomes]
rs11012930	1.00[AMR][1000 genomes]
rs11012959	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012963	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11813663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241581	0.84[LWK][hapmap]
rs12249265	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253809	1.00[AMR][1000 genomes]
rs12257327	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922161	1.00[AMR][1000 genomes]
rs2026631	0.89[LWK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs7075793	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs7084298	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7092238	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094794	1.00[AMR][1000 genomes]
rs73596583	1.00[AMR][1000 genomes]
rs73596584	1.00[AMR][1000 genomes]
rs73596585	1.00[AMR][1000 genomes]
rs73596586	1.00[AMR][1000 genomes]
rs7904329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911562	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913154	1.00[AMR][1000 genomes]
rs7913454	1.00[AMR][1000 genomes]
rs9971241	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22678800-22679800	Flanking Active TSS	K562	blood

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