Variant report
| Variant | rs12249265 |
|---|---|
| Chromosome Location | chr10:22681440-22681441 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22625398..22631647-chr10:22676300..22682265,8 | K562 | blood: | |
| 2 | chr10:22614179..22617012-chr10:22679231..22681759,3 | K562 | blood: | |
| 3 | chr10:22603971..22605635-chr10:22679537..22682108,3 | K562 | blood: | |
| 4 | chr10:22608333..22611559-chr10:22678806..22682635,4 | K562 | blood: | |
| 5 | chr10:22628696..22632444-chr10:22679412..22682265,6 | K562 | blood: | |
| 6 | chr10:22611886..22615757-chr10:22677839..22683321,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168283 | Chromatin interaction |
| ENSG00000272366 | Chromatin interaction |
| ENSG00000148444 | Chromatin interaction |
| ENSG00000269897 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10508643 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11012884 | 1.00[AMR][1000 genomes] |
| rs11012929 | 1.00[AMR][1000 genomes] |
| rs11012930 | 1.00[AMR][1000 genomes] |
| rs11012959 | 0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11012963 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11813663 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12253809 | 1.00[AMR][1000 genomes] |
| rs12257327 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16922161 | 1.00[AMR][1000 genomes] |
| rs2026631 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7075793 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7084298 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7088482 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7092238 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7094794 | 1.00[AMR][1000 genomes] |
| rs73596583 | 1.00[AMR][1000 genomes] |
| rs73596584 | 1.00[AMR][1000 genomes] |
| rs73596585 | 1.00[AMR][1000 genomes] |
| rs73596586 | 1.00[AMR][1000 genomes] |
| rs7904329 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7911562 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7913154 | 1.00[AMR][1000 genomes] |
| rs7913454 | 1.00[AMR][1000 genomes] |
| rs9971241 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22680800-22682200 | Active TSS | Fetal Muscle Leg | muscle |
| 2 | chr10:22680800-22683200 | Active TSS | K562 | blood |
