Variant report

Variant	rs2041459
Chromosome Location	chr17:15906646-15906647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15906093-15910039	A549	lung:	n/a	n/a
2	POLR2A	chr17:15906578-15906712	GM12878	blood:	n/a	n/a
3	POLR2A	chr17:15906585-15906739	ProgFib	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15906619-15906669	AoSMC	blood vessel:	n/a
2	chr17:15906619-15906669	NH-A	brain:	n/a
3	chr17:15906619-15906669	MCF-7	breast:	n/a
4	chr17:15906619-15906669	HMEC	breast:	n/a
5	chr17:15906619-15906669	Hepatocyte	liver:	n/a
6	chr17:15906619-15906669	PFSK-1	brain:	n/a
7	chr17:15906619-15906669	AG04449	skin:	fetal
8	chr17:15906619-15906669	BE2_C	brain:	n/a
9	chr17:15906619-15906669	LNCaP	prostate:	n/a
10	chr17:15906619-15906669	Hela-S3	cervix:	n/a
11	chr17:15906619-15906669	SAEC	small airway:	n/a
12	chr17:15906619-15906669	A549	lung:	n/a
13	chr17:15906619-15906669	PANC-1	pancreas:	n/a
14	chr17:15906619-15906669	IMR90	lung:	fetal
15	chr17:15906619-15906669	HCF	heart:	n/a
16	chr17:15906619-15906669	HRE	kidney:	n/a
17	chr17:15906619-15906669	GM12878	blood:	n/a
18	chr17:15906619-15906669	HNPCEpiC	eye:	n/a
19	chr17:15906619-15906669	SKMC	muscle:	n/a
20	chr17:15906619-15906669	GM12891	blood:	n/a
21	chr17:15906619-15906669	SK-N-SH	brain:	n/a
22	chr17:15906619-15906669	PrEC	prostate:	n/a
23	chr17:15906619-15906669	GM19239	blood:	n/a
24	chr17:15906619-15906669	NHDF-neo	bronchial:	n/a
25	chr17:15906619-15906669	AG10803	skin:	n/a
26	chr17:15906619-15906669	GM12892	blood:	n/a
27	chr17:15906619-15906669	HIPEpiC	eye:	n/a
28	chr17:15906619-15906669	HCM	heart:	n/a
29	chr17:15906619-15906669	HL-60	blood:	n/a
30	chr17:15906619-15906669	HEK293	kidney:	embryo
31	chr17:15906619-15906669	Jurkat	blood:	n/a
32	chr17:15906619-15906669	T-47D	breast:	n/a
33	chr17:15906619-15906669	NT2-D1	testis:	n/a
34	chr17:15906619-15906669	HRCEpiC	kidney:	n/a
35	chr17:15906619-15906669	CMK	blood:	n/a
36	chr17:15906619-15906669	HAEpiC	amniotic membrane:	n/a
37	chr17:15906619-15906669	U87	brain:	n/a
38	chr17:15906619-15906669	MCF10A-Er-Src	breast:	n/a
39	chr17:15906619-15906669	HCT-116	colon:	n/a
40	chr17:15906619-15906669	Caco-2	colon:	n/a
41	chr17:15906619-15906669	AG04450	lung:	fetal
42	chr17:15906619-15906669	BJ	skin:	n/a
43	chr17:15906619-15906669	ECC-1	luminal epithelium:	n/a
44	chr17:15906619-15906669	RPTEC	kidney:	n/a
45	chr17:15906619-15906669	HepG2	liver:	n/a
46	chr17:15906619-15906669	HCPEpiC	choroid plexus:	n/a
47	chr17:15906619-15906669	AG09309	skin:	n/a
48	chr17:15906619-15906669	HPAEpiC	pulmonary alveolar:	n/a
49	chr17:15906619-15906669	ovcar-3	ovarian:	n/a
50	chr17:15906619-15906669	HEEpiC	esophagus:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:15905164..15907778-chr17:15930822..15933599,2	K562	blood:
2	chr17:15900606..15905101-chr17:15906142..15909387,7	K562	blood:
3	chr17:15905982..15907631-chr17:15908656..15910993,3	K562	blood:

No data

Variant related genes	Relation type
ZSWIM7	TF binding region
ZSWIM7	CpG island
ENSG00000214941	Chromatin interaction
ENSG00000011295	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10491104	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1065822	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1075901	0.82[EUR][1000 genomes]
rs1079533	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078321	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078327	0.81[EUR][1000 genomes]
rs11078328	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078330	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078331	0.81[EUR][1000 genomes]
rs1125156	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11651290	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11651508	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11652025	0.82[EUR][1000 genomes]
rs11655456	0.81[EUR][1000 genomes]
rs11656046	0.82[EUR][1000 genomes]
rs11657160	0.82[EUR][1000 genomes]
rs11657912	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11868809	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869450	0.80[EUR][1000 genomes]
rs11869563	0.81[EUR][1000 genomes]
rs11871961	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11872032	0.86[EUR][1000 genomes]
rs12451075	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12942295	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12945546	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12947205	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12948361	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2015353	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041460	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051736	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2157990	0.82[EUR][1000 genomes]
rs2157991	0.82[EUR][1000 genomes]
rs2157992	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285582	0.81[EUR][1000 genomes]
rs2301651	0.83[ASN][1000 genomes]
rs2324084	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2779211	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34236618	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35168566	0.82[EUR][1000 genomes]
rs36001065	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3760297	0.82[EUR][1000 genomes]
rs3760298	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785628	0.81[EUR][1000 genomes]
rs3785631	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3785633	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815038	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3815039	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3826360	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4239134	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4791660	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791661	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4791662	0.85[EUR][1000 genomes]
rs4792709	0.80[EUR][1000 genomes]
rs4792711	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4792712	0.81[EUR][1000 genomes]
rs4792713	0.82[EUR][1000 genomes]
rs4792715	0.80[EUR][1000 genomes]
rs4792716	0.82[EUR][1000 genomes]
rs4792717	0.82[EUR][1000 genomes]
rs4792719	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55676330	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62073587	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6416868	0.80[EUR][1000 genomes]
rs6502482	0.84[EUR][1000 genomes]
rs6502488	0.82[EUR][1000 genomes]
rs7207889	0.85[EUR][1000 genomes]
rs7209094	0.81[EUR][1000 genomes]
rs7210655	0.81[EUR][1000 genomes]
rs7214891	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216949	0.80[EUR][1000 genomes]
rs7217614	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833498	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs758853	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065190	0.82[EUR][1000 genomes]
rs8070859	0.81[EUR][1000 genomes]
rs8076669	0.83[EUR][1000 genomes]
rs8076864	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8080706	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8081406	0.80[EUR][1000 genomes]
rs9652827	0.82[EUR][1000 genomes]
rs9652828	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9709250	0.82[EUR][1000 genomes]
rs9889745	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9889822	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9890012	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9891379	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9896441	0.81[EUR][1000 genomes]
rs9897542	0.81[EUR][1000 genomes]
rs9898313	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9899002	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905429	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9908031	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9909615	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9916868	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
9	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv907709	chr17:15851196-15937487	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv907708	chr17:15851196-15950751	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1057493	chr17:15852125-15930718	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv543215	chr17:15852125-15930718	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv907710	chr17:15854257-15950751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1062220	chr17:15869557-16093156	Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
16	nsv1064878	chr17:15869557-16097241	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	nsv1055173	chr17:15875935-16097241	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
18	nsv1056157	chr17:15890584-16088473	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs2041459	ADORA2B	cis	Artery Tibial	GTEx
rs2041459	ADORA2B	cis	Thyroid	GTEx
rs2041459	ZSWIM7	cis	Muscle Skeletal	GTEx
rs2041459	ADORA2B	cis	Esophagus Muscularis	GTEx
rs2041459	CENPV	cis	Artery Tibial	GTEx
rs2041459	NCOR1	Cis_1M	lymphoblastoid	RTeQTL
rs2041459	ADORA2B	cis	Nerve Tibial	GTEx
rs2041459	ADORA2B	cis	Adipose Subcutaneous	GTEx
rs2041459	TTC19	Cis_1M	lymphoblastoid	RTeQTL
rs2041459	ZSWIM7	Cis_1M	lymphoblastoid	RTeQTL
rs2041459	ADORA2B	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15903800-15907000	Weak transcription	Aorta	Aorta
2	chr17:15904000-15910800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:15904200-15907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:15904400-15912600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr17:15904600-15912200	Strong transcription	Primary B cells from cord blood	blood
6	chr17:15904600-15912600	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr17:15904600-15913400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:15904800-15906800	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr17:15904800-15907000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr17:15904800-15908000	Weak transcription	Right Ventricle	heart
11	chr17:15904800-15909400	Strong transcription	Fetal Kidney	kidney
12	chr17:15904800-15912000	Strong transcription	Fetal Brain Female	brain
13	chr17:15904800-15912400	Strong transcription	Fetal Thymus	thymus
14	chr17:15904800-15912600	Strong transcription	Colon Smooth Muscle	Colon
15	chr17:15904800-15912600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:15904800-15912600	Strong transcription	Fetal Lung	lung
17	chr17:15904800-15912600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr17:15904800-15914400	Strong transcription	Liver	Liver
19	chr17:15904800-15915800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:15904800-15917200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:15905000-15907200	Weak transcription	Fetal Brain Male	brain
22	chr17:15905000-15908800	Strong transcription	Ovary	ovary
23	chr17:15905000-15909200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:15905000-15909400	Strong transcription	Pancreas	Pancrea
25	chr17:15905000-15912200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:15905000-15912200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:15905000-15912200	Strong transcription	Brain Substantia Nigra	brain
28	chr17:15905000-15912200	Strong transcription	Colonic Mucosa	Colon
29	chr17:15905000-15912200	Strong transcription	Fetal Muscle Leg	muscle
30	chr17:15905000-15912200	Strong transcription	Fetal Stomach	stomach
31	chr17:15905000-15912600	Strong transcription	Brain Angular Gyrus	brain
32	chr17:15905000-15912600	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr17:15905000-15912600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:15905000-15912600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr17:15905000-15912600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr17:15905000-15913200	Strong transcription	NHDF-Ad	bronchial
37	chr17:15905000-15914600	Weak transcription	Stomach Mucosa	stomach
38	chr17:15905000-15915000	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr17:15905000-15915200	Strong transcription	HSMM	muscle
40	chr17:15905000-15915600	Strong transcription	NH-A	brain
41	chr17:15905000-15915800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr17:15905000-15916000	Strong transcription	Osteobl	bone
43	chr17:15905000-15916800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr17:15905000-15939600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr17:15905000-15946400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:15905200-15907400	Strong transcription	Adipose Nuclei	Adipose
47	chr17:15905200-15907800	Strong transcription	HSMMtube	muscle
48	chr17:15905200-15908600	Strong transcription	Lung	lung
49	chr17:15905200-15909000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr17:15905200-15909000	Strong transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links