Variant report

Variant	rs2041460
Chromosome Location	chr17:15906912-15906913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15906093-15910039	A549	lung:	n/a	n/a
2	POLR2A	chr17:15906876-15907113	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:15905164..15907778-chr17:15930822..15933599,2	K562	blood:
2	chr17:15900606..15905101-chr17:15906142..15909387,7	K562	blood:
3	chr17:15905982..15907631-chr17:15908656..15910993,3	K562	blood:

Variant related genes	Relation type
ZSWIM7	TF binding region
ENSG00000011295	Chromatin interaction
ENSG00000214941	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10491104	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1065822	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1075901	0.88[GIH][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs1079533	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078321	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078327	0.81[EUR][1000 genomes]
rs11078328	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078330	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078331	0.81[EUR][1000 genomes]
rs1125156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1160109	0.96[CEU][hapmap]
rs11650678	0.96[CEU][hapmap]
rs11651290	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11651508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11652025	0.82[EUR][1000 genomes]
rs11655456	0.81[EUR][1000 genomes]
rs11656046	0.82[EUR][1000 genomes]
rs11657160	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs11657912	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11868809	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869450	0.80[EUR][1000 genomes]
rs11869563	0.81[EUR][1000 genomes]
rs11871961	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11872032	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12451075	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12942295	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12945546	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12947205	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12948361	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs178657	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs178805	0.96[CEU][hapmap]
rs178809	0.96[CEU][hapmap]
rs178814	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs178815	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap]
rs178816	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[YRI][hapmap]
rs178820	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs178822	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs178837	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs178838	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs178839	0.81[CEU][hapmap]
rs1989856	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap]
rs2015353	0.92[CEU][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041459	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051736	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2078050	0.81[CEU][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs2157990	0.90[GIH][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs2157991	0.81[CEU][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs2157992	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285582	0.81[EUR][1000 genomes]
rs2301651	0.83[ASN][1000 genomes]
rs2301652	0.87[TSI][hapmap]
rs2324084	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324141	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs2324142	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap]
rs2779211	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34236618	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35168566	0.82[EUR][1000 genomes]
rs36001065	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3760297	0.82[EUR][1000 genomes]
rs3760298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785628	0.81[CEU][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs3785631	0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3785633	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815038	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3815039	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3826360	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4239134	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4435297	0.81[CEU][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap]
rs4791660	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791661	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4791662	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4792709	0.80[EUR][1000 genomes]
rs4792711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4792712	0.81[EUR][1000 genomes]
rs4792713	0.82[EUR][1000 genomes]
rs4792715	0.80[EUR][1000 genomes]
rs4792716	0.82[EUR][1000 genomes]
rs4792717	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs4792719	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4792721	0.86[GIH][hapmap];0.85[TSI][hapmap]
rs55676330	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62073587	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6416868	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs6502482	0.81[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6502488	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs7207889	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7209094	0.81[EUR][1000 genomes]
rs7210655	0.81[EUR][1000 genomes]
rs7214695	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs7214891	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216949	0.80[EUR][1000 genomes]
rs7217614	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7223346	0.81[CEU][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs72833498	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs758853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065190	0.82[EUR][1000 genomes]
rs8070859	0.81[EUR][1000 genomes]
rs8076669	0.83[EUR][1000 genomes]
rs8076864	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8079969	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs8080706	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8081406	0.80[EUR][1000 genomes]
rs9652827	0.82[EUR][1000 genomes]
rs9652828	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9709250	0.82[EUR][1000 genomes]
rs9889745	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9889822	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9890012	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9891379	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9896441	0.81[EUR][1000 genomes]
rs9897542	0.81[EUR][1000 genomes]
rs9898313	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9899002	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902141	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs9903464	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs9905429	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9908031	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9909615	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9909697	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs9916868	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
9	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv907709	chr17:15851196-15937487	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv907708	chr17:15851196-15950751	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1057493	chr17:15852125-15930718	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv543215	chr17:15852125-15930718	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv907710	chr17:15854257-15950751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1062220	chr17:15869557-16093156	Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
16	nsv1064878	chr17:15869557-16097241	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	nsv1055173	chr17:15875935-16097241	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
18	nsv1056157	chr17:15890584-16088473	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs2041460	ADORA2B	cis	Artery Tibial	GTEx
rs2041460	Hs.379903	cis	multi-tissue	Pritchard
rs2041460	ADORA2B	cis	Adipose Subcutaneous	GTEx
rs2041460	TTC19	cis	multi-tissue	Pritchard
rs2041460	ADORA2B	cis	multi-tissue	Pritchard
rs2041460	ADORA2B	cis	Thyroid	GTEx
rs2041460	LOC125150	cis	normal skin	skin_eQTL
rs2041460	LOC125150	cis	lesional skin	skin_eQTL
rs2041460	ZSWIM7	cis	Muscle Skeletal	GTEx
rs2041460	ADORA2B	cis	Muscle Skeletal	GTEx
rs2041460	NCOR1	cis	parietal	SCAN
rs2041460	ADORA2B	cis	Nerve Tibial	GTEx
rs2041460	PIGL	cis	multi-tissue	Pritchard
rs2041460	LOC125150	cis	uninvolved skin	skin_eQTL
rs2041460	ADORA2B	cis	Esophagus Muscularis	GTEx
rs2041460	TTC19	cis	lymphoblastoid	seeQTL
rs2041460	CENPV	cis	parietal	SCAN
rs2041460	CENPV	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15903800-15907000	Weak transcription	Aorta	Aorta
2	chr17:15904000-15910800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:15904200-15907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:15904400-15912600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr17:15904600-15912200	Strong transcription	Primary B cells from cord blood	blood
6	chr17:15904600-15912600	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr17:15904600-15913400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:15904800-15907000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr17:15904800-15908000	Weak transcription	Right Ventricle	heart
10	chr17:15904800-15909400	Strong transcription	Fetal Kidney	kidney
11	chr17:15904800-15912000	Strong transcription	Fetal Brain Female	brain
12	chr17:15904800-15912400	Strong transcription	Fetal Thymus	thymus
13	chr17:15904800-15912600	Strong transcription	Colon Smooth Muscle	Colon
14	chr17:15904800-15912600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr17:15904800-15912600	Strong transcription	Fetal Lung	lung
16	chr17:15904800-15912600	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr17:15904800-15914400	Strong transcription	Liver	Liver
18	chr17:15904800-15915800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr17:15904800-15917200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:15905000-15907200	Weak transcription	Fetal Brain Male	brain
21	chr17:15905000-15908800	Strong transcription	Ovary	ovary
22	chr17:15905000-15909200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:15905000-15909400	Strong transcription	Pancreas	Pancrea
24	chr17:15905000-15912200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:15905000-15912200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
26	chr17:15905000-15912200	Strong transcription	Brain Substantia Nigra	brain
27	chr17:15905000-15912200	Strong transcription	Colonic Mucosa	Colon
28	chr17:15905000-15912200	Strong transcription	Fetal Muscle Leg	muscle
29	chr17:15905000-15912200	Strong transcription	Fetal Stomach	stomach
30	chr17:15905000-15912600	Strong transcription	Brain Angular Gyrus	brain
31	chr17:15905000-15912600	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr17:15905000-15912600	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr17:15905000-15912600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr17:15905000-15912600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr17:15905000-15913200	Strong transcription	NHDF-Ad	bronchial
36	chr17:15905000-15914600	Weak transcription	Stomach Mucosa	stomach
37	chr17:15905000-15915000	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr17:15905000-15915200	Strong transcription	HSMM	muscle
39	chr17:15905000-15915600	Strong transcription	NH-A	brain
40	chr17:15905000-15915800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr17:15905000-15916000	Strong transcription	Osteobl	bone
42	chr17:15905000-15916800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:15905000-15939600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr17:15905000-15946400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr17:15905200-15907400	Strong transcription	Adipose Nuclei	Adipose
46	chr17:15905200-15907800	Strong transcription	HSMMtube	muscle
47	chr17:15905200-15908600	Strong transcription	Lung	lung
48	chr17:15905200-15909000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr17:15905200-15909000	Strong transcription	Esophagus	oesophagus
50	chr17:15905200-15909200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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