Variant report

Variant	rs206736
Chromosome Location	chr6:164506918-164506919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1436852	1.00[ASN][1000 genomes]
rs16896005	1.00[ASN][1000 genomes]
rs16896013	1.00[ASN][1000 genomes]
rs172272	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs205999	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs206706	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs206743	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364690	0.85[AMR][1000 genomes]
rs365554	0.85[AMR][1000 genomes]
rs366057	0.85[AMR][1000 genomes]
rs368098	0.85[AMR][1000 genomes]
rs368285	0.85[AMR][1000 genomes]
rs372947	0.85[AMR][1000 genomes]
rs384602	0.85[AMR][1000 genomes]
rs392065	0.85[AMR][1000 genomes]
rs393056	0.85[AMR][1000 genomes]
rs393189	0.85[AMR][1000 genomes]
rs393937	0.85[AMR][1000 genomes]
rs394700	0.85[AMR][1000 genomes]
rs396287	0.85[AMR][1000 genomes]
rs401619	0.85[AMR][1000 genomes]
rs409221	0.85[AMR][1000 genomes]
rs416506	0.85[AMR][1000 genomes]
rs417441	0.85[AMR][1000 genomes]
rs420852	0.85[AMR][1000 genomes]
rs421102	0.85[AMR][1000 genomes]
rs421311	0.85[AMR][1000 genomes]
rs430842	0.85[AMR][1000 genomes]
rs432051	0.85[AMR][1000 genomes]
rs440055	0.85[AMR][1000 genomes]
rs441521	0.85[AMR][1000 genomes]
rs444411	0.85[AMR][1000 genomes]
rs445206	0.85[AMR][1000 genomes]
rs447413	0.85[AMR][1000 genomes]
rs447823	0.85[AMR][1000 genomes]
rs450552	0.85[AMR][1000 genomes]
rs450677	0.85[AMR][1000 genomes]
rs452936	0.85[AMR][1000 genomes]
rs453909	0.85[AMR][1000 genomes]
rs4620091	0.85[AMR][1000 genomes]
rs55635944	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55827712	1.00[ASN][1000 genomes]
rs55947109	1.00[ASN][1000 genomes]
rs56076452	1.00[ASN][1000 genomes]
rs56153379	1.00[ASN][1000 genomes]
rs60840152	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688989	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164504800-164507400	Enhancers	Fetal Brain Male	brain
2	chr6:164504800-164508000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164504800-164508000	Enhancers	Fetal Muscle Trunk	muscle
4	chr6:164505000-164507400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:164505200-164507000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:164505200-164507600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:164505200-164507600	Enhancers	Fetal Heart	heart
8	chr6:164505200-164507800	Enhancers	Fetal Muscle Leg	muscle
9	chr6:164505200-164507800	Enhancers	Left Ventricle	heart
10	chr6:164505400-164507400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:164505400-164507400	Enhancers	HUVEC	blood vessel
12	chr6:164505400-164507800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:164505800-164507600	Enhancers	HSMM	muscle
14	chr6:164506000-164507000	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:164506000-164507200	Active TSS	Brain Anterior Caudate	brain
16	chr6:164506000-164507200	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:164506000-164507200	Active TSS	Brain Hippocampus Middle	brain
18	chr6:164506000-164507400	Flanking Active TSS	NH-A	brain
19	chr6:164506000-164507600	Active TSS	Brain Substantia Nigra	brain
20	chr6:164506200-164507000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr6:164506200-164507000	Weak transcription	NHDF-Ad	bronchial
22	chr6:164506200-164507200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:164506400-164507000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:164506400-164507000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:164506400-164507200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:164506400-164507200	Flanking Active TSS	Fetal Brain Female	brain
27	chr6:164506400-164507200	Enhancers	Fetal Lung	lung
28	chr6:164506400-164507200	Weak transcription	Lung	lung
29	chr6:164506400-164507200	Weak transcription	Pancreas	Pancrea
30	chr6:164506400-164507600	Weak transcription	Right Ventricle	heart
31	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:164506600-164507000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:164506600-164507000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:164506600-164507000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:164506600-164507200	Active TSS	Psoas Muscle	Psoas
36	chr6:164506600-164507400	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr6:164506600-164508000	Enhancers	Primary hematopoietic stem cells	blood
40	chr6:164506800-164507000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:164506800-164507000	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr6:164506800-164507000	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr6:164506800-164507000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:164506800-164507000	Enhancers	Spleen	Spleen
45	chr6:164506800-164507000	Bivalent Enhancer	HepG2	liver
46	chr6:164506800-164507000	Active TSS	Osteobl	bone
47	chr6:164506800-164507200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:164506800-164507200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr6:164506800-164507200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:164506800-164507200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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