Variant report

Variant	rs55827712
Chromosome Location	chr6:164461196-164461197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164457135..164459137-chr6:164459767..164461428,2	K562	blood:
2	chr6:164460567..164462817-chr6:164464682..164466683,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1436852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205999	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206706	1.00[ASN][1000 genomes]
rs206736	1.00[ASN][1000 genomes]
rs206743	1.00[ASN][1000 genomes]
rs364690	0.95[EUR][1000 genomes]
rs365554	0.95[EUR][1000 genomes]
rs366057	0.95[EUR][1000 genomes]
rs368098	0.95[EUR][1000 genomes]
rs368285	0.95[EUR][1000 genomes]
rs372947	0.95[EUR][1000 genomes]
rs384602	0.95[EUR][1000 genomes]
rs392065	0.97[EUR][1000 genomes]
rs393056	0.95[EUR][1000 genomes]
rs393189	0.95[EUR][1000 genomes]
rs393937	0.95[EUR][1000 genomes]
rs394700	0.95[EUR][1000 genomes]
rs396287	0.95[EUR][1000 genomes]
rs401619	0.95[EUR][1000 genomes]
rs402205	0.95[EUR][1000 genomes]
rs409221	0.95[EUR][1000 genomes]
rs416506	0.95[EUR][1000 genomes]
rs417441	0.95[EUR][1000 genomes]
rs420852	0.95[EUR][1000 genomes]
rs421102	0.95[EUR][1000 genomes]
rs421311	0.95[EUR][1000 genomes]
rs430842	0.95[EUR][1000 genomes]
rs432051	0.95[EUR][1000 genomes]
rs440055	0.95[EUR][1000 genomes]
rs441521	0.95[EUR][1000 genomes]
rs444411	0.95[EUR][1000 genomes]
rs445206	0.95[EUR][1000 genomes]
rs447413	0.97[EUR][1000 genomes]
rs447823	1.00[EUR][1000 genomes]
rs450552	0.95[EUR][1000 genomes]
rs450677	0.95[EUR][1000 genomes]
rs452936	0.95[EUR][1000 genomes]
rs453274	0.95[EUR][1000 genomes]
rs453909	0.95[EUR][1000 genomes]
rs4620091	0.95[EUR][1000 genomes]
rs55635944	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947109	1.00[ASN][1000 genomes]
rs56076452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153379	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58500753	0.97[EUR][1000 genomes]
rs60840152	1.00[ASN][1000 genomes]
rs688989	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164446400-164462800	Weak transcription	Right Atrium	heart
2	chr6:164457600-164461200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:164459400-164461200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:164460800-164461200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:164460800-164461200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:164460800-164461200	Active TSS	Primary T cells fromperipheralblood	blood
7	chr6:164460800-164461200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:164460800-164461200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:164460800-164461200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:164460800-164461200	Active TSS	Fetal Muscle Trunk	muscle
11	chr6:164460800-164461200	Active TSS	Placenta	Placenta
12	chr6:164461000-164461200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr6:164461000-164461200	ZNF genes & repeats	Pancreas	Pancrea
14	chr6:164461000-164461200	Flanking Active TSS	K562	blood
15	chr6:164461000-164461400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:164461000-164461600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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